Incidental Mutation 'R6813:Vmn2r96'
ID 533982
Institutional Source Beutler Lab
Gene Symbol Vmn2r96
Ensembl Gene ENSMUSG00000091679
Gene Name vomeronasal 2, receptor 96
Synonyms EG433070
MMRRC Submission 044925-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.141) question?
Stock # R6813 (G1)
Quality Score 225.009
Status Not validated
Chromosome 17
Chromosomal Location 18573151-18616003 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 18581854 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Histidine to Arginine at position 119 (H119R)
Ref Sequence ENSEMBL: ENSMUSP00000156012 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000165692] [ENSMUST00000177244] [ENSMUST00000231261] [ENSMUST00000231286]
AlphaFold E9PZU5
Predicted Effect probably benign
Transcript: ENSMUST00000165692
SMART Domains Protein: ENSMUSP00000131564
Gene: ENSMUSG00000091679

DomainStartEndE-ValueType
Pfam:ANF_receptor 1 257 8.6e-20 PFAM
Pfam:NCD3G 317 370 3.7e-22 PFAM
Pfam:7tm_3 402 638 3.9e-53 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000177244
AA Change: H119R

PolyPhen 2 Score 0.035 (Sensitivity: 0.94; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000135095
Gene: ENSMUSG00000091679
AA Change: H119R

DomainStartEndE-ValueType
Pfam:ANF_receptor 1 245 4.2e-19 PFAM
Pfam:NCD3G 317 370 6.9e-21 PFAM
Pfam:7tm_3 400 639 3.4e-75 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000231261
Predicted Effect probably benign
Transcript: ENSMUST00000231286
AA Change: H119R

PolyPhen 2 Score 0.035 (Sensitivity: 0.94; Specificity: 0.82)
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.8%
  • 10x: 98.9%
  • 20x: 96.9%
Validation Efficiency 100% (61/61)
Allele List at MGI
Other mutations in this stock
Total: 63 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2410089E03Rik T A 15: 8,229,282 (GRCm38) N2337K probably benign Het
Adgrb2 C A 4: 130,009,491 (GRCm38) Q603K probably damaging Het
Adgrf3 A G 5: 30,197,521 (GRCm38) F503S probably damaging Het
Arfgap3 A T 15: 83,330,593 (GRCm38) M164K probably benign Het
Asb13 G T 13: 3,645,029 (GRCm38) V166F probably damaging Het
Atm T G 9: 53,497,235 (GRCm38) R1103S probably benign Het
Atxn7l1 T C 12: 33,367,124 (GRCm38) I626T probably damaging Het
Brsk2 A G 7: 142,002,477 (GRCm38) I649V probably benign Het
Ccdc25 T A 14: 65,856,433 (GRCm38) M85K probably benign Het
Cdc42bpb A G 12: 111,327,615 (GRCm38) V231A probably damaging Het
Clstn3 T A 6: 124,436,935 (GRCm38) M767L probably benign Het
Col6a6 C T 9: 105,783,941 (GRCm38) R323K probably benign Het
Creld1 A G 6: 113,489,569 (GRCm38) Y199C probably damaging Het
Csf1r T A 18: 61,112,734 (GRCm38) D254E probably benign Het
Dab2ip C T 2: 35,730,473 (GRCm38) Q1118* probably null Het
Dcun1d4 C A 5: 73,520,957 (GRCm38) S98R possibly damaging Het
Disp3 G A 4: 148,259,930 (GRCm38) P505L probably benign Het
Dlec1 A T 9: 119,112,102 (GRCm38) Q240L probably benign Het
Edil3 T A 13: 89,289,456 (GRCm38) I392N probably damaging Het
Epha10 T A 4: 124,902,693 (GRCm38) S398R Het
Ephb1 A G 9: 102,010,048 (GRCm38) I464T possibly damaging Het
Eps15 T A 4: 109,280,402 (GRCm38) probably null Het
Fam111a T A 19: 12,587,342 (GRCm38) C152S probably damaging Het
Flt3 T C 5: 147,354,843 (GRCm38) E599G probably damaging Het
Frmd3 T C 4: 74,159,245 (GRCm38) S259P probably benign Het
Gm15922 T C 7: 3,736,003 (GRCm38) H535R probably benign Het
Gm30302 T A 13: 49,787,396 (GRCm38) R279S probably benign Het
Hsfy2 A G 1: 56,636,302 (GRCm38) Y359H possibly damaging Het
Ifih1 C T 2: 62,645,693 (GRCm38) V80M possibly damaging Het
Il12rb2 A C 6: 67,292,374 (GRCm38) D818E probably damaging Het
Il4i1 A G 7: 44,839,812 (GRCm38) T334A probably benign Het
Irs2 G A 8: 11,004,659 (GRCm38) Q1258* probably null Het
Lsm1 T G 8: 25,793,693 (GRCm38) H44Q probably benign Het
Mgam A T 6: 40,750,165 (GRCm38) M1257L probably damaging Het
Myc T C 15: 61,988,152 (GRCm38) S225P probably damaging Het
Myh1 T C 11: 67,220,460 (GRCm38) V1575A probably benign Het
Myo9b A G 8: 71,323,305 (GRCm38) D380G probably damaging Het
Ncoa7 T A 10: 30,696,192 (GRCm38) D157V probably damaging Het
Olfr314 G T 11: 58,786,646 (GRCm38) Q137H probably benign Het
Olfr828 G A 9: 18,815,892 (GRCm38) T134M probably benign Het
Olfr877 A C 9: 37,855,514 (GRCm38) E232A possibly damaging Het
Olfr883 T C 9: 38,025,833 (GRCm38) V9A probably damaging Het
Olfr980 T A 9: 40,006,457 (GRCm38) H164L probably benign Het
Pccb A G 9: 101,023,215 (GRCm38) V117A probably damaging Het
Pdp2 C T 8: 104,594,499 (GRCm38) H327Y probably damaging Het
Pdzph1 G T 17: 58,974,436 (GRCm38) Q284K probably benign Het
Phka2 G A X: 160,533,048 (GRCm38) V230I probably damaging Het
Phldb1 A T 9: 44,699,568 (GRCm38) S751R probably damaging Het
Ppp1r1b T A 11: 98,349,176 (GRCm38) probably null Het
Ppp1r3a A G 6: 14,719,571 (GRCm38) V448A probably benign Het
Pvrig A T 5: 138,342,050 (GRCm38) T28S probably benign Het
Rasgrf1 G A 9: 90,010,484 (GRCm38) probably null Het
Scnn1g T C 7: 121,740,353 (GRCm38) L125S probably damaging Het
Slc30a7 A T 3: 115,981,811 (GRCm38) D221E probably benign Het
Tmem30c A G 16: 57,281,259 (GRCm38) probably null Het
Tmem33 T C 5: 67,264,459 (GRCm38) probably null Het
Ttc29 A T 8: 78,333,620 (GRCm38) T390S probably benign Het
Vamp5 G A 6: 72,380,441 (GRCm38) probably benign Het
Vmn2r81 T A 10: 79,268,605 (GRCm38) F354Y probably benign Het
Wdr3 G A 3: 100,138,725 (GRCm38) R931* probably null Het
Wdr78 T C 4: 103,048,326 (GRCm38) K753E probably benign Het
Wtap A T 17: 12,967,510 (GRCm38) N383K probably damaging Het
Zfp808 T C 13: 62,173,035 (GRCm38) Y693H probably damaging Het
Other mutations in Vmn2r96
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00562:Vmn2r96 APN 17 18,583,815 (GRCm38) missense probably benign 0.00
IGL00563:Vmn2r96 APN 17 18,583,815 (GRCm38) missense probably benign 0.00
IGL00769:Vmn2r96 APN 17 18,583,819 (GRCm38) missense probably benign 0.00
IGL01314:Vmn2r96 APN 17 18,582,964 (GRCm38) missense probably benign 0.00
IGL01983:Vmn2r96 APN 17 18,597,265 (GRCm38) missense probably damaging 0.99
IGL02314:Vmn2r96 APN 17 18,583,959 (GRCm38) missense probably benign 0.01
IGL02600:Vmn2r96 APN 17 18,597,567 (GRCm38) missense probably benign
IGL02672:Vmn2r96 APN 17 18,598,114 (GRCm38) missense probably benign 0.02
IGL02750:Vmn2r96 APN 17 18,582,589 (GRCm38) missense probably benign 0.01
IGL03068:Vmn2r96 APN 17 18,582,875 (GRCm38) missense probably benign 0.00
IGL03411:Vmn2r96 APN 17 18,586,372 (GRCm38) missense possibly damaging 0.88
R0316:Vmn2r96 UTSW 17 18,582,565 (GRCm38) missense probably damaging 1.00
R0502:Vmn2r96 UTSW 17 18,584,000 (GRCm38) missense probably benign
R0580:Vmn2r96 UTSW 17 18,582,638 (GRCm38) missense probably damaging 1.00
R0652:Vmn2r96 UTSW 17 18,597,568 (GRCm38) missense probably benign 0.05
R0789:Vmn2r96 UTSW 17 18,582,476 (GRCm38) missense possibly damaging 0.81
R1462:Vmn2r96 UTSW 17 18,597,398 (GRCm38) missense possibly damaging 0.94
R1462:Vmn2r96 UTSW 17 18,597,398 (GRCm38) missense possibly damaging 0.94
R1660:Vmn2r96 UTSW 17 18,597,726 (GRCm38) missense probably benign 0.00
R1755:Vmn2r96 UTSW 17 18,582,653 (GRCm38) missense possibly damaging 0.50
R1843:Vmn2r96 UTSW 17 18,597,921 (GRCm38) missense probably benign 0.14
R1943:Vmn2r96 UTSW 17 18,586,402 (GRCm38) missense probably benign 0.09
R1993:Vmn2r96 UTSW 17 18,583,876 (GRCm38) missense probably damaging 1.00
R2018:Vmn2r96 UTSW 17 18,584,001 (GRCm38) missense probably benign
R2405:Vmn2r96 UTSW 17 18,597,840 (GRCm38) missense probably damaging 0.96
R3977:Vmn2r96 UTSW 17 18,597,679 (GRCm38) missense probably damaging 1.00
R3979:Vmn2r96 UTSW 17 18,597,679 (GRCm38) missense probably damaging 1.00
R4059:Vmn2r96 UTSW 17 18,598,077 (GRCm38) missense probably benign 0.20
R4693:Vmn2r96 UTSW 17 18,583,008 (GRCm38) missense probably benign 0.03
R4709:Vmn2r96 UTSW 17 18,582,826 (GRCm38) missense probably benign 0.36
R4776:Vmn2r96 UTSW 17 18,597,508 (GRCm38) missense probably damaging 1.00
R4882:Vmn2r96 UTSW 17 18,597,604 (GRCm38) missense probably damaging 1.00
R4920:Vmn2r96 UTSW 17 18,582,656 (GRCm38) missense probably benign 0.07
R5143:Vmn2r96 UTSW 17 18,583,858 (GRCm38) missense possibly damaging 0.65
R5301:Vmn2r96 UTSW 17 18,597,688 (GRCm38) missense probably damaging 0.98
R5507:Vmn2r96 UTSW 17 18,597,829 (GRCm38) missense probably damaging 1.00
R6151:Vmn2r96 UTSW 17 18,583,959 (GRCm38) missense probably benign 0.01
R6181:Vmn2r96 UTSW 17 18,583,864 (GRCm38) missense probably benign
R6339:Vmn2r96 UTSW 17 18,583,862 (GRCm38) missense possibly damaging 0.84
R6404:Vmn2r96 UTSW 17 18,597,531 (GRCm38) missense probably damaging 1.00
R6452:Vmn2r96 UTSW 17 18,583,855 (GRCm38) missense probably benign 0.07
R6749:Vmn2r96 UTSW 17 18,598,090 (GRCm38) missense probably damaging 0.99
R6851:Vmn2r96 UTSW 17 18,582,538 (GRCm38) missense possibly damaging 0.95
R6944:Vmn2r96 UTSW 17 18,597,629 (GRCm38) missense probably benign 0.16
R6949:Vmn2r96 UTSW 17 18,597,838 (GRCm38) missense probably damaging 1.00
R6962:Vmn2r96 UTSW 17 18,598,021 (GRCm38) missense probably damaging 0.99
R6990:Vmn2r96 UTSW 17 18,583,820 (GRCm38) missense probably benign
R7149:Vmn2r96 UTSW 17 18,597,727 (GRCm38) missense possibly damaging 0.89
R7346:Vmn2r96 UTSW 17 18,582,767 (GRCm38) missense probably benign 0.15
R7385:Vmn2r96 UTSW 17 18,583,040 (GRCm38) missense probably damaging 1.00
R7442:Vmn2r96 UTSW 17 18,573,400 (GRCm38) missense probably benign 0.02
R7509:Vmn2r96 UTSW 17 18,582,733 (GRCm38) missense probably benign 0.02
R7652:Vmn2r96 UTSW 17 18,573,570 (GRCm38) missense probably benign
R7659:Vmn2r96 UTSW 17 18,573,487 (GRCm38) missense probably benign 0.00
R7753:Vmn2r96 UTSW 17 18,586,401 (GRCm38) missense possibly damaging 0.46
R7855:Vmn2r96 UTSW 17 18,597,868 (GRCm38) missense possibly damaging 0.59
R8166:Vmn2r96 UTSW 17 18,582,482 (GRCm38) missense probably damaging 1.00
R8260:Vmn2r96 UTSW 17 18,583,981 (GRCm38) missense probably benign 0.04
R8323:Vmn2r96 UTSW 17 18,582,761 (GRCm38) missense probably damaging 0.99
R8787:Vmn2r96 UTSW 17 18,597,988 (GRCm38) missense probably damaging 1.00
R8837:Vmn2r96 UTSW 17 18,582,626 (GRCm38) missense probably benign
R8933:Vmn2r96 UTSW 17 18,583,979 (GRCm38) missense probably benign 0.11
R9306:Vmn2r96 UTSW 17 18,582,964 (GRCm38) missense probably benign 0.00
R9481:Vmn2r96 UTSW 17 18,573,359 (GRCm38) start gained probably benign
R9626:Vmn2r96 UTSW 17 18,573,496 (GRCm38) missense probably benign 0.14
R9629:Vmn2r96 UTSW 17 18,582,995 (GRCm38) missense probably benign 0.15
Z1088:Vmn2r96 UTSW 17 18,597,366 (GRCm38) missense possibly damaging 0.86
Z1177:Vmn2r96 UTSW 17 18,598,114 (GRCm38) missense probably benign 0.02
Predicted Primers PCR Primer
(F):5'- TCCAGTTCATCTGTTCATGATAAGG -3'
(R):5'- CAAATCCAAATTTTCTCACCTGTGG -3'

Sequencing Primer
(F):5'- CAATTTGCCATTGAGGAGA -3'
(R):5'- CCTGTGGAAATTTAAAGAGTTGAAGC -3'
Posted On 2018-09-12