Mutagenetix > Incidental Mutation

Incidental Mutation 'R7841:Ptgfrn'

606281

Institutional Source

Beutler Lab

Gene Symbol

Ptgfrn

Ensembl Gene

ENSMUSG00000027864

Gene Name

prostaglandin F2 receptor negative regulator

Synonyms

4833445A08Rik, CD9P-1

MMRRC Submission

045895-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7841 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

100947548-101017594 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 100968126 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 489 (I489N)

Ref Sequence

ENSEMBL: ENSMUSP00000099755 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102694]

AlphaFold

Q9WV91

Predicted Effect

probably damaging
Transcript: ENSMUST00000102694
AA Change: I489N

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000099755
Gene: ENSMUSG00000027864
AA Change: I489N

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
IGv	38	121	3.01e-7	SMART
IG	154	264	1.54e-4	SMART
IG	284	390	1.11e-5	SMART
IG	414	532	1.72e-2	SMART
IG	556	676	9.71e-2	SMART
IG	696	822	5.21e-2	SMART
transmembrane domain	831	853	N/A	INTRINSIC
low complexity region	862	872	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Homozygous mice for a null gene trap mutation exhibit a decreased depressive-like response during tail suspension testing when compared with their wild-type littermates, [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700016H13Rik	T	C	5: 103,802,806 (GRCm39)	K16R	possibly damaging	Het
2810408A11Rik	A	G	11: 69,790,112 (GRCm39)	F210L	probably benign	Het
Adam6a	G	T	12: 113,509,078 (GRCm39)	D484Y	probably damaging	Het
B9d1	A	G	11: 61,397,192 (GRCm39)	Y29C	possibly damaging	Het
Cald1	T	C	6: 34,722,696 (GRCm39)	F115L	unknown	Het
Ccnd1	A	T	7: 144,491,718 (GRCm39)	M107K	probably damaging	Het
Ccnh	G	A	13: 85,337,712 (GRCm39)	A20T	probably benign	Het
Cep162	T	C	9: 87,126,369 (GRCm39)	D181G	probably benign	Het
Cep44	AACGC	A	8: 56,994,018 (GRCm39)		probably null	Het
Ces2b	A	G	8: 105,561,692 (GRCm39)	D262G	probably benign	Het
Cic	A	G	7: 24,985,192 (GRCm39)	Y1146C	probably damaging	Het
Cmtm1	G	A	8: 105,036,108 (GRCm39)	R174C	possibly damaging	Het
Cobl	G	T	11: 12,203,324 (GRCm39)	P1126H	probably damaging	Het
Col14a1	T	A	15: 55,245,876 (GRCm39)	M460K	unknown	Het
Cst11	G	A	2: 148,613,227 (GRCm39)	R33W	possibly damaging	Het
Cyp19a1	A	T	9: 54,079,089 (GRCm39)	V340E	probably benign	Het
Dbt	A	T	3: 116,339,746 (GRCm39)	Q378L	possibly damaging	Het
Dchs1	A	G	7: 105,412,180 (GRCm39)	V1312A	probably benign	Het
Eif3l	T	C	15: 78,973,779 (GRCm39)	M398T	probably benign	Het
Faxc	A	G	4: 21,958,584 (GRCm39)	H247R	probably benign	Het
Fbxl17	T	C	17: 63,794,820 (GRCm39)	R421G	probably damaging	Het
Fbxo3	T	A	2: 103,890,337 (GRCm39)	D450E	unknown	Het
Fmn1	T	C	2: 113,359,810 (GRCm39)		probably null	Het
Foxs1	T	A	2: 152,774,907 (GRCm39)	M49L	possibly damaging	Het
Gucy1a2	A	G	9: 3,634,766 (GRCm39)	E270G	probably benign	Het
Helz2	T	C	2: 180,874,695 (GRCm39)	D1933G	probably damaging	Het
Hspa4	G	A	11: 53,157,887 (GRCm39)	A572V	possibly damaging	Het
Ica1	T	A	6: 8,737,072 (GRCm39)	D174V	probably damaging	Het
Igfbp6	A	T	15: 102,056,352 (GRCm39)	Q137L	possibly damaging	Het
Il1r2	T	C	1: 40,144,628 (GRCm39)	L105P	probably damaging	Het
Iqca1	A	T	1: 89,987,337 (GRCm39)	C72S		Het
Itgbl1	T	C	14: 124,209,645 (GRCm39)		probably null	Het
Ivl	T	A	3: 92,479,699 (GRCm39)	Q122L	possibly damaging	Het
Kdsr	T	C	1: 106,671,415 (GRCm39)	E198G	probably damaging	Het
Lama2	T	C	10: 27,031,529 (GRCm39)	T1510A	probably benign	Het
Lrrc37a	A	T	11: 103,391,931 (GRCm39)	Y1165N	probably benign	Het
Mycbp2	A	G	14: 103,384,267 (GRCm39)		probably null	Het
Myh3	A	G	11: 66,989,518 (GRCm39)	E1546G	probably damaging	Het
Nacad	A	T	11: 6,551,031 (GRCm39)	V720E	probably benign	Het
Napa	A	G	7: 15,849,559 (GRCm39)	D257G	possibly damaging	Het
Nif3l1	T	C	1: 58,487,042 (GRCm39)	V76A	probably damaging	Het
Nkapd1	A	C	9: 50,521,716 (GRCm39)	S68R	probably damaging	Het
Nphp4	G	A	4: 152,581,140 (GRCm39)	S108N	probably benign	Het
Npr1	A	T	3: 90,362,175 (GRCm39)	L990H	probably damaging	Het
Nup205	A	G	6: 35,224,372 (GRCm39)	R322G	unknown	Het
Or4a79	C	A	2: 89,552,309 (GRCm39)	A49S	probably benign	Het
Or4q3	G	T	14: 50,583,285 (GRCm39)	Q174K	probably benign	Het
Or52n2c	T	A	7: 104,574,066 (GRCm39)	I302F	possibly damaging	Het
Or8c14-ps1	T	G	9: 38,101,777 (GRCm39)	M252R	unknown	Het
Or8c19-ps1	T	A	9: 38,220,817 (GRCm39)	V242E	unknown	Het
Ovch2	G	T	7: 107,393,298 (GRCm39)	Q192K	probably benign	Het
Pcca	T	A	14: 122,800,384 (GRCm39)	D91E	probably benign	Het
Pole2	T	C	12: 69,251,032 (GRCm39)	T444A	probably damaging	Het
Ppip5k1	T	C	2: 121,173,276 (GRCm39)	K466E	probably benign	Het
Prr35	A	T	17: 26,167,458 (GRCm39)	Y26*	probably null	Het
Rassf1	A	G	9: 107,438,744 (GRCm39)	*341W	probably null	Het
Ret	G	A	6: 118,132,321 (GRCm39)	P1040S	probably damaging	Het
Rictor	C	T	15: 6,801,635 (GRCm39)	S441L	probably benign	Het
Rsf1	A	AAGGCGACGG	7: 97,229,111 (GRCm39)		probably null	Het
Slc6a17	A	T	3: 107,384,214 (GRCm39)	Y377N	possibly damaging	Het
Snrnp200	C	A	2: 127,078,754 (GRCm39)	D1806E	probably benign	Het
Synj2	G	A	17: 6,094,419 (GRCm39)	R1215H	unknown	Het
Tbc1d5	TTGCTGCTGGTGTTGCTGCTGCTGCTGCTG	TTGCTGCTG	17: 51,106,950 (GRCm39)		probably benign	Het
Top2a	A	T	11: 98,913,176 (GRCm39)	D85E	probably damaging	Het
Tram1l1	A	T	3: 124,115,353 (GRCm39)	Q171L	probably damaging	Het
Tram1l1	G	T	3: 124,115,354 (GRCm39)	Q171H	probably damaging	Het
Tspyl4	A	G	10: 34,174,267 (GRCm39)	H253R	probably damaging	Het
Ttn	T	C	2: 76,662,490 (GRCm39)	I23V		Het
Ubr5	T	C	15: 37,981,150 (GRCm39)	N2376D		Het
Ugt2b37	T	C	5: 87,398,489 (GRCm39)	N316D	probably benign	Het
Usp31	A	C	7: 121,247,679 (GRCm39)	S1255A	probably benign	Het
Usp31	A	T	7: 121,276,535 (GRCm39)	V334E	probably damaging	Het
Vmn2r108	A	G	17: 20,690,305 (GRCm39)		probably null	Het
Vmn2r87	T	A	10: 130,333,095 (GRCm39)	T52S	probably benign	Het
Vrk2	C	A	11: 26,421,457 (GRCm39)	L500F	probably damaging	Het
Zan	T	A	5: 137,435,064 (GRCm39)	I2110F	unknown	Het

Other mutations in Ptgfrn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00949:Ptgfrn	APN	3	100,980,161 (GRCm39)	missense	probably benign	0.01
IGL01710:Ptgfrn	APN	3	100,980,404 (GRCm39)	missense	probably damaging	0.98
IGL02557:Ptgfrn	APN	3	100,967,952 (GRCm39)	critical splice donor site	probably null
IGL02740:Ptgfrn	APN	3	100,980,253 (GRCm39)	missense	possibly damaging	0.84
IGL02817:Ptgfrn	APN	3	100,968,068 (GRCm39)	missense	probably benign
IGL02948:Ptgfrn	APN	3	100,980,135 (GRCm39)	missense	probably benign	0.21
R1540:Ptgfrn	UTSW	3	100,967,970 (GRCm39)	missense	probably benign	0.41
R1563:Ptgfrn	UTSW	3	100,967,967 (GRCm39)	missense	possibly damaging	0.67
R1730:Ptgfrn	UTSW	3	100,963,758 (GRCm39)	missense	possibly damaging	0.71
R1766:Ptgfrn	UTSW	3	100,957,438 (GRCm39)	missense	probably benign	0.00
R1783:Ptgfrn	UTSW	3	100,963,758 (GRCm39)	missense	possibly damaging	0.71
R1918:Ptgfrn	UTSW	3	100,963,623 (GRCm39)	missense	probably benign
R2113:Ptgfrn	UTSW	3	100,984,625 (GRCm39)	missense	probably benign	0.00
R2290:Ptgfrn	UTSW	3	100,984,677 (GRCm39)	missense	possibly damaging	0.77
R3522:Ptgfrn	UTSW	3	100,950,718 (GRCm39)	missense	probably damaging	1.00
R5223:Ptgfrn	UTSW	3	100,952,909 (GRCm39)	missense	probably benign	0.13
R5600:Ptgfrn	UTSW	3	100,963,566 (GRCm39)	missense	probably damaging	0.99
R5642:Ptgfrn	UTSW	3	100,950,678 (GRCm39)	missense	probably damaging	1.00
R5927:Ptgfrn	UTSW	3	100,967,968 (GRCm39)	missense	possibly damaging	0.92
R5984:Ptgfrn	UTSW	3	100,957,459 (GRCm39)	missense	probably damaging	0.99
R6124:Ptgfrn	UTSW	3	100,980,405 (GRCm39)	missense	probably damaging	0.98
R6331:Ptgfrn	UTSW	3	100,952,936 (GRCm39)	missense	possibly damaging	0.64
R6363:Ptgfrn	UTSW	3	100,952,894 (GRCm39)	missense	possibly damaging	0.93
R6473:Ptgfrn	UTSW	3	100,952,955 (GRCm39)	missense	probably damaging	1.00
R6856:Ptgfrn	UTSW	3	100,952,762 (GRCm39)	missense	probably damaging	1.00
R7151:Ptgfrn	UTSW	3	100,987,511 (GRCm39)	nonsense	probably null
R7313:Ptgfrn	UTSW	3	100,980,363 (GRCm39)	missense	possibly damaging	0.84
R7361:Ptgfrn	UTSW	3	100,984,760 (GRCm39)	missense	probably benign	0.03
R7806:Ptgfrn	UTSW	3	100,984,448 (GRCm39)	missense	possibly damaging	0.50
R7823:Ptgfrn	UTSW	3	100,950,725 (GRCm39)	missense	probably damaging	1.00
R8093:Ptgfrn	UTSW	3	100,980,257 (GRCm39)	missense	probably benign	0.09
R8093:Ptgfrn	UTSW	3	100,963,753 (GRCm39)	missense	probably benign	0.19
R8490:Ptgfrn	UTSW	3	100,963,686 (GRCm39)	missense	probably damaging	0.99
R8856:Ptgfrn	UTSW	3	100,963,927 (GRCm39)	missense	possibly damaging	0.86
Z1088:Ptgfrn	UTSW	3	100,963,753 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGAGGCCCAGAATATGTTGAC -3'
(R):5'- ACCTGAACGCTTCTAAGGTC -3'

Sequencing Primer
(F):5'- CCCAGAATATGTTGACAGGCTTG -3'
(R):5'- TAAGGTCCCCGGGTTTTCAGAC -3'

Posted On

2019-12-20