Mutagenetix > Incidental Mutation

Incidental Mutation 'R5069:Sidt2'

388554

Institutional Source

Beutler Lab

Gene Symbol

Sidt2

Ensembl Gene

ENSMUSG00000034908

Gene Name

SID1 transmembrane family, member 2

Synonyms

CGI-40

MMRRC Submission

042659-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.147) question?

Stock #

R5069 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

45937857-45955258 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 45939461 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000150408 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034590] [ENSMUST00000038488] [ENSMUST00000114573] [ENSMUST00000160618] [ENSMUST00000215509]

AlphaFold

Q8CIF6

Predicted Effect

probably null
Transcript: ENSMUST00000034590

SMART Domains

Protein: ENSMUSP00000034590
Gene: ENSMUSG00000032085

Domain	Start	End	E-Value	Type
CH	26	133	1.53e-20	SMART
Pfam:Calponin	175	199	5.5e-16	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000038488
AA Change: D794E

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000044290
Gene: ENSMUSG00000034908
AA Change: D794E

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	169	832	8.5e-214	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000114573
AA Change: D815E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000110220
Gene: ENSMUSG00000034908
AA Change: D815E

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	169	853	9e-290	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000159033
AA Change: D51E

SMART Domains

Protein: ENSMUSP00000125273
Gene: ENSMUSG00000034908
AA Change: D51E

Domain	Start	End	E-Value	Type
low complexity region	12	29	N/A	INTRINSIC
Pfam:SID-1_RNA_chan	30	74	1e-23	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160598

Predicted Effect

probably benign
Transcript: ENSMUST00000160618

SMART Domains

Protein: ENSMUSP00000125037
Gene: ENSMUSG00000034908

Domain	Start	End	E-Value	Type
low complexity region	36	47	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160670

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160927

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184840

Predicted Effect

probably null
Transcript: ENSMUST00000215509

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216035

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.5%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a targeted allele exhibit male-specific decreased body weight and size, impaired glucose tolerance, increased serum glucose, decreased serum insulin and decreased insule granule release from beta cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	G	14: 32,661,792	S739P	possibly damaging	Het
9330182L06Rik	T	A	5: 9,440,897	C636S	probably damaging	Het
Actn2	A	G	13: 12,288,522	I464T	possibly damaging	Het
Adcy7	T	C	8: 88,327,697	L1060P	probably damaging	Het
Aff3	A	G	1: 38,181,613		probably null	Het
Ankar	T	C	1: 72,680,210		probably null	Het
Ankrd27	A	T	7: 35,628,435	K793N	probably damaging	Het
Arhgef28	T	C	13: 98,075,206	T90A	probably damaging	Het
Armc9	A	T	1: 86,257,237	H670L	probably benign	Het
Arvcf	A	G	16: 18,398,986	Y412C	probably damaging	Het
Ass1	C	T	2: 31,510,173	T301M	probably damaging	Het
Baiap3	A	T	17: 25,249,108	C283S	probably damaging	Het
BC055324	T	C	1: 163,987,674	T93A	possibly damaging	Het
Birc6	C	T	17: 74,565,972	R409C	probably damaging	Het
Calcoco1	A	G	15: 102,711,092	L354P	probably damaging	Het
Cdh3	A	G	8: 106,536,826	N126S	probably benign	Het
Cfap54	A	C	10: 92,937,774	F135L	probably benign	Het
Dlg1	G	T	16: 31,684,295		probably null	Het
Dnah3	T	C	7: 120,032,790	H1314R	probably benign	Het
Dsp	A	C	13: 38,197,123	T2615P	possibly damaging	Het
Enpp2	T	C	15: 54,864,054	Y513C	probably damaging	Het
Ercc6	T	C	14: 32,570,063	V1128A	probably benign	Het
Gipc2	A	G	3: 152,094,248	F282L	probably benign	Het
Gm1043	T	G	5: 37,187,236	L231R	probably damaging	Het
Gm13178	T	A	4: 144,703,867	D184V	probably damaging	Het
Gm14085	A	T	2: 122,494,373	N142I	possibly damaging	Het
Gm14685	T	C	X: 73,127,971	I323T	probably damaging	Het
Gpr153	T	A	4: 152,279,883	M132K	probably damaging	Het
Hbs1l	T	A	10: 21,354,647	S496T	probably damaging	Het
Inpp5f	A	G	7: 128,676,727		probably null	Het
Kat6a	G	A	8: 22,903,133	C209Y	probably damaging	Het
Kcna2	T	A	3: 107,104,637	V178D	probably damaging	Het
Krt75	A	G	15: 101,566,238		probably null	Het
Letm2	G	A	8: 25,593,964	Q84*	probably null	Het
Mib1	A	G	18: 10,793,002	E646G	probably damaging	Het
Mmp14	T	A	14: 54,439,113	Y372N	probably damaging	Het
Muc6	A	G	7: 141,651,299	C218R	probably damaging	Het
Myof	A	T	19: 37,905,325	I1130N	possibly damaging	Het
Neil3	A	G	8: 53,601,041	S318P	possibly damaging	Het
Nhlh1	A	G	1: 172,053,900	V133A	probably benign	Het
Nup153	A	C	13: 46,709,792	S331A	probably benign	Het
Nup98	T	C	7: 102,145,655	T882A	probably benign	Het
Olfr1413	T	A	1: 92,573,413	S81T	probably damaging	Het
Olfr599	A	T	7: 103,338,022		probably null	Het
Olfr744	T	A	14: 50,618,740	C173S	probably damaging	Het
Olfr749	C	A	14: 50,737,074	L29F	probably benign	Het
Otx1	C	A	11: 21,997,037	A91S	probably damaging	Het
Pald1	A	T	10: 61,341,246	M675K	possibly damaging	Het
Pex5	A	G	6: 124,413,596	S97P	probably benign	Het
Pitpnm1	C	T	19: 4,111,140	A897V	probably benign	Het
Plxnd1	A	T	6: 115,965,901	V1274E	probably damaging	Het
Polr2a	T	C	11: 69,736,735		probably null	Het
Ppfia1	G	A	7: 144,514,473	Q446*	probably null	Het
Psma2	G	A	13: 14,616,028	V20I	probably benign	Het
Rhbdl2	T	A	4: 123,817,917	L149*	probably null	Het
Rnf17	T	C	14: 56,505,928	V1317A	probably damaging	Het
Rtel1	G	A	2: 181,355,492	V1042M	probably benign	Het
Slc11a1	G	A	1: 74,385,184	A434T	probably damaging	Het
Slc4a10	G	A	2: 62,267,571	R508H	probably benign	Het
Slc5a8	A	T	10: 88,886,598	I98F	possibly damaging	Het
Slf2	T	A	19: 44,935,253	S169T	possibly damaging	Het
Snx33	A	T	9: 56,926,191	I198N	probably damaging	Het
Spock3	A	G	8: 63,355,265	T396A	probably benign	Het
Sva	A	T	6: 42,038,417		probably benign	Het
Syt7	A	G	19: 10,439,237	N261S	probably benign	Het
Taar7b	T	G	10: 24,000,461	S175A	probably benign	Het
Thoc2	C	T	X: 41,806,693	E1491K	probably damaging	Het
Tlr1	T	C	5: 64,926,400	Y278C	probably benign	Het
Tph2	T	A	10: 115,151,174	Y237F	probably benign	Het
Trim35	C	T	14: 66,308,972		probably benign	Het
Trpm4	T	G	7: 45,310,469	Y667S	probably damaging	Het
Ttc27	T	A	17: 74,799,342	H541Q	probably damaging	Het
Ube4a	T	C	9: 44,940,089	H709R	probably damaging	Het
Vwa7	G	A	17: 35,024,190	V615I	probably benign	Het
Wars2	A	G	3: 99,187,533	H48R	probably damaging	Het
Xlr4c	T	A	X: 73,238,684	K121M	probably damaging	Het
Zfc3h1	T	A	10: 115,418,783	C1427*	probably null	Het

Other mutations in Sidt2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00325:Sidt2	APN	9	45942236	missense	possibly damaging	0.84
IGL00586:Sidt2	APN	9	45943052	missense	possibly damaging	0.78
IGL00786:Sidt2	APN	9	45949803	missense	possibly damaging	0.69
IGL01069:Sidt2	APN	9	45943077	missense	possibly damaging	0.73
IGL01160:Sidt2	APN	9	45942726	missense	probably damaging	1.00
IGL01474:Sidt2	APN	9	45946982	critical splice donor site	probably null
IGL02068:Sidt2	APN	9	45945664	critical splice donor site	probably null
IGL02171:Sidt2	APN	9	45952770	missense	possibly damaging	0.81
IGL02312:Sidt2	APN	9	45947001	missense	probably benign	0.27
IGL02344:Sidt2	APN	9	45945292	missense	probably null	1.00
IGL03030:Sidt2	APN	9	45939505	missense	probably damaging	1.00
IGL03062:Sidt2	APN	9	45942683	critical splice donor site	probably null
R0157:Sidt2	UTSW	9	45939267	missense	probably damaging	1.00
R0330:Sidt2	UTSW	9	45954902	missense	probably benign	0.09
R0549:Sidt2	UTSW	9	45953119	splice site	probably null
R0714:Sidt2	UTSW	9	45947060	splice site	probably benign
R1241:Sidt2	UTSW	9	45945704	missense	probably damaging	0.97
R1511:Sidt2	UTSW	9	45950089	missense	probably damaging	1.00
R1558:Sidt2	UTSW	9	45951800	missense	probably damaging	1.00
R1677:Sidt2	UTSW	9	45953219	missense	probably benign	0.01
R2152:Sidt2	UTSW	9	45945340	missense	probably damaging	1.00
R2153:Sidt2	UTSW	9	45945340	missense	probably damaging	1.00
R2154:Sidt2	UTSW	9	45945340	missense	probably damaging	1.00
R4210:Sidt2	UTSW	9	45942775	missense	probably benign	0.00
R4349:Sidt2	UTSW	9	45945713	missense	possibly damaging	0.94
R4855:Sidt2	UTSW	9	45952029	missense	probably benign
R5175:Sidt2	UTSW	9	45951788	missense	probably damaging	1.00
R5276:Sidt2	UTSW	9	45954777	missense	probably damaging	0.97
R5544:Sidt2	UTSW	9	45944455	missense	probably damaging	1.00
R5805:Sidt2	UTSW	9	45942199	missense	probably damaging	0.97
R5927:Sidt2	UTSW	9	45944454	missense	probably damaging	1.00
R6954:Sidt2	UTSW	9	45952850	missense	probably benign	0.01
R7060:Sidt2	UTSW	9	45953246	missense	possibly damaging	0.91
R7117:Sidt2	UTSW	9	45953219	missense	probably benign	0.01
R7207:Sidt2	UTSW	9	45945151	missense	probably damaging	1.00
R7317:Sidt2	UTSW	9	45943690	nonsense	probably null
R7765:Sidt2	UTSW	9	45941575	splice site	probably null
R8098:Sidt2	UTSW	9	45945730	missense	probably benign	0.05
R9039:Sidt2	UTSW	9	45945350	missense	probably benign	0.05
R9157:Sidt2	UTSW	9	45941360	missense	possibly damaging	0.58
R9160:Sidt2	UTSW	9	45946982	critical splice donor site	probably null
R9261:Sidt2	UTSW	9	45950098	missense	probably damaging	0.99
R9313:Sidt2	UTSW	9	45941360	missense	possibly damaging	0.58
R9641:Sidt2	UTSW	9	45953197	missense	probably benign	0.00
R9792:Sidt2	UTSW	9	45939265	missense	probably damaging	0.97
R9793:Sidt2	UTSW	9	45939265	missense	probably damaging	0.97
R9803:Sidt2	UTSW	9	45943614	missense	probably damaging	1.00
X0026:Sidt2	UTSW	9	45939299	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGTCGTCATCCAACGTCAGC -3'
(R):5'- TGCCCACATCTCTAAAGGGAAG -3'

Sequencing Primer
(F):5'- CGTCAGCAAAACCTAAGGGTG -3'
(R):5'- CCACATCTCTAAAGGGAAGATGGGTC -3'

Posted On

2016-06-06