Mutagenetix > Incidental Mutation

Incidental Mutation 'R8516:Exd1'

656126

Institutional Source

Beutler Lab

Gene Symbol

Exd1

Ensembl Gene

ENSMUSG00000048647

Gene Name

exonuclease 3'-5' domain containing 1

Synonyms

Exdl1, 4932702D22Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8516 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

119516505-119547627 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 119520073 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 569 (L569Q)

Ref Sequence

ENSEMBL: ENSMUSP00000054980 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060009] [ENSMUST00000171024]

AlphaFold

Q8CDF7

Predicted Effect

probably damaging
Transcript: ENSMUST00000060009
AA Change: L569Q

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000054980
Gene: ENSMUSG00000048647
AA Change: L569Q

Domain	Start	End	E-Value	Type
low complexity region	73	84	N/A	INTRINSIC
35EXOc	134	325	2.29e-4	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000171024
AA Change: L569Q

PolyPhen 2 Score 0.974 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000126713
Gene: ENSMUSG00000048647
AA Change: L569Q

Domain	Start	End	E-Value	Type
low complexity region	73	84	N/A	INTRINSIC
35EXOc	134	325	2.29e-4	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.6%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are fertile and viable, but exhibit defective biogenesis of antisense piRNAs and activation of transposons in male germ cells. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aasdhppt	A	T	9: 4,309,373	S22T	probably benign	Het
Actr8	G	T	14: 29,990,899	A500S	probably benign	Het
Adamtsl1	A	G	4: 86,342,543	Y1005C	probably damaging	Het
Ank3	T	A	10: 69,927,729	Y884*	probably null	Het
Arhgap28	T	C	17: 67,873,073	R306G	probably benign	Het
Atp8a2	A	C	14: 59,691,472	I1044M	probably benign	Het
Bahd1	A	G	2: 118,916,971	Y357C	probably benign	Het
Btd	A	T	14: 31,666,867	T182S	probably damaging	Het
Casc3	C	T	11: 98,822,781	R280C	probably damaging	Het
Cisd2	T	C	3: 135,411,013	T106A	probably damaging	Het
Cldn15	G	T	5: 136,974,696	C184F	probably damaging	Het
Clk4	G	A	11: 51,275,261	R198Q	probably damaging	Het
Coprs	G	T	8: 13,885,065	F163L	probably damaging	Het
Csmd3	G	A	15: 47,629,365	R2216*	probably null	Het
Defb7	A	T	8: 19,497,607	I43F	possibly damaging	Het
Dpp8	C	A	9: 65,078,009	T783K	probably damaging	Het
Eif2s1	G	A	12: 78,881,162	G204D	probably damaging	Het
Elavl4	T	C	4: 110,251,379	N56S	probably damaging	Het
Emilin1	G	A	5: 30,917,171	R252H	probably damaging	Het
Gm498	T	A	7: 143,897,274	I342N	probably damaging	Het
Gpn2	C	T	4: 133,584,831	R125C	probably damaging	Het
Gria2	T	C	3: 80,706,987	E582G	probably benign	Het
Hadha	A	T	5: 30,126,584	V458E	probably damaging	Het
Hap1	T	C	11: 100,356,067	K4R	possibly damaging	Het
Hectd4	A	T	5: 121,349,010	H3356L	possibly damaging	Het
Herc2	G	A	7: 56,206,570	V3919I	probably benign	Het
Lgr6	G	T	1: 135,075,283	N76K	probably damaging	Het
Olfr692	A	G	7: 105,368,769	I148V	probably benign	Het
P4ha3	A	G	7: 100,314,662	M462V	probably damaging	Het
Pde3b	A	T	7: 114,526,849	M773L	probably benign	Het
Peak1	T	C	9: 56,260,000	S215G	probably damaging	Het
Pgm5	T	A	19: 24,815,710	M331L	probably benign	Het
Piwil2	A	G	14: 70,420,739	V213A	probably benign	Het
Plch2	T	C	4: 154,986,307	H1205R	probably benign	Het
Pop4	A	T	7: 38,267,402	M85K	probably benign	Het
Ppp3ca	T	A	3: 136,877,768	I212N	probably damaging	Het
Prom1	T	C	5: 44,007,099	K714R	probably benign	Het
Psip1	C	T	4: 83,466,715	G207S	probably benign	Het
Rgs22	A	G	15: 36,010,335	*1259Q	probably null	Het
Scn1a	C	T	2: 66,326,134	G477D	possibly damaging	Het
Sf3b1	T	C	1: 55,012,103	E222G	probably null	Het
Snrpa1	G	A	7: 66,070,633	G195R	probably benign	Het
Spem2	T	C	11: 69,816,895	R415G	possibly damaging	Het
Tmem167	T	A	13: 90,098,396	V13E	probably damaging	Het
Trim2	C	T	3: 84,208,320	A102T	probably damaging	Het
Trim30b	A	G	7: 104,357,404	S82P	probably benign	Het
Uba6	A	C	5: 86,127,748	S760R	possibly damaging	Het
Upf2	T	C	2: 6,018,971	F711L	unknown	Het
Utrn	T	A	10: 12,486,510	D2693V	probably damaging	Het
Vmn1r30	T	G	6: 58,435,124	Y241S	probably damaging	Het
Vmn2r110	A	G	17: 20,574,613	L598P	probably damaging	Het
Wfdc18	T	A	11: 83,709,158	F14Y	probably benign	Het
Wnt10b	A	T	15: 98,772,880	C256S	probably damaging	Het
Xrn1	T	A	9: 96,048,391	Y1554*	probably null	Het
Zc3h12a	T	A	4: 125,119,839	S411C	probably damaging	Het
Zfp112	G	A	7: 24,123,964	G63E	probably benign	Het
Zfp786	A	T	6: 47,820,543	L487Q	probably damaging	Het
Zfp953	T	A	13: 67,345,355	Y75F	possibly damaging	Het

Other mutations in Exd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01295:Exd1	APN	2	119530079	splice site	probably benign
IGL02032:Exd1	APN	2	119533467	missense	probably damaging	1.00
IGL02040:Exd1	APN	2	119540065	missense	possibly damaging	0.79
IGL02831:Exd1	APN	2	119528754	missense	probably damaging	1.00
IGL03008:Exd1	APN	2	119520381	missense	probably benign	0.01
R0350:Exd1	UTSW	2	119523566	missense	possibly damaging	0.64
R1423:Exd1	UTSW	2	119540013	splice site	probably benign
R1466:Exd1	UTSW	2	119520734	splice site	probably benign
R1524:Exd1	UTSW	2	119524674	missense	probably damaging	0.98
R2011:Exd1	UTSW	2	119528663	intron	probably benign
R2026:Exd1	UTSW	2	119520305	missense	probably benign
R4711:Exd1	UTSW	2	119538751	missense	possibly damaging	0.91
R4827:Exd1	UTSW	2	119520326	missense	probably benign
R4828:Exd1	UTSW	2	119520326	missense	probably benign
R4829:Exd1	UTSW	2	119520326	missense	probably benign
R4830:Exd1	UTSW	2	119520326	missense	probably benign
R5799:Exd1	UTSW	2	119538781	missense	probably benign	0.01
R6570:Exd1	UTSW	2	119520173	missense	probably benign
R6654:Exd1	UTSW	2	119524717	critical splice acceptor site	probably null
R6907:Exd1	UTSW	2	119533476	missense	probably damaging	1.00
R7325:Exd1	UTSW	2	119520139	missense	probably benign	0.28
R7684:Exd1	UTSW	2	119520203	missense	probably damaging	1.00
R7921:Exd1	UTSW	2	119530099	missense	probably damaging	0.99
R8029:Exd1	UTSW	2	119528723	missense	probably damaging	1.00
R8428:Exd1	UTSW	2	119538867	missense	possibly damaging	0.80
R9136:Exd1	UTSW	2	119528904	missense	probably damaging	1.00
R9390:Exd1	UTSW	2	119523699	missense	probably damaging	1.00
R9451:Exd1	UTSW	2	119524583	missense	possibly damaging	0.91
R9655:Exd1	UTSW	2	119520374	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- GAATGGCATGTTTGACCTCACC -3'
(R):5'- TAGAGCAGTTGACAGTGGTG -3'

Sequencing Primer
(F):5'- GGCATGTTTGACCTCACCCATTAC -3'
(R):5'- TGGTGGGAAATAAGGGAGCTTTAAC -3'

Posted On

2020-10-20