Mutagenetix > Incidental Mutation

Incidental Mutation 'R7395:Lrig2'

573713

Institutional Source

Beutler Lab

Gene Symbol

Lrig2

Ensembl Gene

ENSMUSG00000032913

Gene Name

leucine-rich repeats and immunoglobulin-like domains 2

Synonyms

4632419I10Rik

MMRRC Submission

045477-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7395 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

104361296-104419251 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 104404836 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 91 (N91D)

Ref Sequence

ENSEMBL: ENSMUSP00000035999 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046316] [ENSMUST00000198332] [ENSMUST00000199070]

AlphaFold

Q52KR2

Predicted Effect

probably benign
Transcript: ENSMUST00000046316
AA Change: N91D

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000035999
Gene: ENSMUSG00000032913
AA Change: N91D

Domain	Start	End	E-Value	Type
signal peptide	1	39	N/A	INTRINSIC
low complexity region	68	82	N/A	INTRINSIC
LRR	118	141	3.56e2	SMART
LRR	142	165	1.81e2	SMART
LRR	167	188	1.31e0	SMART
LRR	213	236	1.41e0	SMART
LRR	237	260	4.98e-1	SMART
LRR	261	284	1.49e1	SMART
LRR	285	308	1.62e0	SMART
LRR	309	332	2.14e0	SMART
LRR_TYP	333	356	2.2e-2	SMART
LRR	357	383	9.22e0	SMART
LRR	384	407	2.17e-1	SMART
LRR_TYP	408	431	3.95e-4	SMART
LRRCT	442	492	3.62e-8	SMART
IG	503	598	2.19e-9	SMART
IGc2	613	681	1.94e-10	SMART
IGc2	707	772	3.2e-11	SMART
transmembrane domain	805	827	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000198332
AA Change: N91D

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000142540
Gene: ENSMUSG00000032913
AA Change: N91D

Domain	Start	End	E-Value	Type
signal peptide	1	39	N/A	INTRINSIC
low complexity region	68	82	N/A	INTRINSIC
LRR	118	141	3.56e2	SMART
LRR	142	165	1.81e2	SMART
LRR	167	188	1.31e0	SMART
LRR	213	236	1.41e0	SMART
LRR	237	260	4.98e-1	SMART
LRR	261	284	1.49e1	SMART
LRR	285	308	1.62e0	SMART
LRR	309	332	2.14e0	SMART
LRR_TYP	333	356	2.2e-2	SMART
LRR	357	383	9.22e0	SMART
LRR	384	407	2.17e-1	SMART
LRR_TYP	408	431	3.95e-4	SMART
LRRCT	442	492	3.62e-8	SMART
IG	503	598	2.19e-9	SMART
IGc2	613	681	1.94e-10	SMART
IGc2	707	772	3.2e-11	SMART
transmembrane domain	805	827	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000199070

SMART Domains

Protein: ENSMUSP00000142373
Gene: ENSMUSG00000032913

Domain	Start	End	E-Value	Type
signal peptide	1	39	N/A	INTRINSIC
LRRCT	84	134	1.8e-10	SMART
IG	145	240	9.2e-12	SMART
IGc2	255	323	8.1e-13	SMART
IGc2	349	414	1.3e-13	SMART
transmembrane domain	447	469	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

99% (92/93)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transmembrane protein containing leucine-rich repeats and immunoglobulin-like domains. The encoded protein promotes epidermal growth factor signalling, resulting in increased proliferation. Its expression in the cytoplasm of glioma cells is correlated with poor survival. Mutations in this gene can cause urofacial syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced susceptibility to PDGFB-induced glioma and premature death due to illness with reduced body weight, letahrgy, hackled fur, crouched posture and increased inflammatory response. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3830403N18Rik	G	T	X: 55,184,140 (GRCm39)		probably null	Het
4930433I11Rik	A	T	7: 40,639,102 (GRCm39)	T13S	probably damaging	Het
Abca13	A	G	11: 9,241,658 (GRCm39)	I1174V	probably benign	Het
Acoxl	G	A	2: 127,726,336 (GRCm39)	V237M	probably damaging	Het
Adam33	A	C	2: 130,903,089 (GRCm39)	W52G	probably benign	Het
Adgrv1	T	C	13: 81,707,467 (GRCm39)	H1313R	probably damaging	Het
Ap3d1	T	C	10: 80,566,716 (GRCm39)	T89A	probably benign	Het
Armc8	T	C	9: 99,415,185 (GRCm39)	E165G	probably damaging	Het
Atp6v1c1	T	C	15: 38,691,949 (GRCm39)	*383Q	probably null	Het
Atp8b4	A	T	2: 126,217,614 (GRCm39)	L634Q	possibly damaging	Het
B3glct	A	G	5: 149,649,069 (GRCm39)		probably null	Het
Bhlhe40	TG	TGG	6: 108,641,818 (GRCm39)	254	probably null	Het
Bicd2	A	G	13: 49,531,706 (GRCm39)	D316G	possibly damaging	Het
Bop1	A	T	15: 76,338,041 (GRCm39)	S610T	probably damaging	Het
Car11	T	A	7: 45,350,745 (GRCm39)	Y80*	probably null	Het
Ccdc121rt2	A	T	5: 112,598,035 (GRCm39)	E194V	possibly damaging	Het
Ccdc96	T	C	5: 36,642,609 (GRCm39)	I205T	probably benign	Het
Ces2a	A	G	8: 105,466,273 (GRCm39)	E390G	probably benign	Het
Cfap54	C	A	10: 92,720,565 (GRCm39)	V2630L	unknown	Het
Chek2	G	T	5: 111,019,974 (GRCm39)		probably null	Het
Cntn3	C	T	6: 102,314,355 (GRCm39)		probably null	Het
Cpne3	A	T	4: 19,528,239 (GRCm39)	D339E	probably damaging	Het
Crocc2	C	T	1: 93,143,829 (GRCm39)	Q1403*	probably null	Het
Crppa	A	T	12: 36,551,994 (GRCm39)	I283F	possibly damaging	Het
Csnka2ip	G	A	16: 64,299,803 (GRCm39)	T187I		Het
Ctu1	A	G	7: 43,326,019 (GRCm39)	H226R	possibly damaging	Het
Cubn	G	T	2: 13,291,875 (GRCm39)	Q3317K	probably damaging	Het
Cyp17a1	A	G	19: 46,659,134 (GRCm39)	L169P	probably benign	Het
Dcc	T	A	18: 71,507,640 (GRCm39)	K911*	probably null	Het
Dcun1d2	G	A	8: 13,328,675 (GRCm39)	R75*	probably null	Het
Defb19	A	T	2: 152,421,943 (GRCm39)		probably null	Het
Dffb	A	T	4: 154,053,570 (GRCm39)	S257R	probably damaging	Het
Dip2c	A	C	13: 9,664,413 (GRCm39)	N942T	probably damaging	Het
Dnah3	T	A	7: 119,565,474 (GRCm39)	I169F		Het
Dnah3	T	C	7: 119,660,183 (GRCm39)	M830V	probably benign	Het
Dnajc5g	G	A	5: 31,269,009 (GRCm39)	S130N	possibly damaging	Het
Dscaml1	C	A	9: 45,613,703 (GRCm39)	Q939K	possibly damaging	Het
Evpl	G	C	11: 116,117,905 (GRCm39)	N761K	possibly damaging	Het
Fbxw8	A	T	5: 118,206,280 (GRCm39)	I556N	probably damaging	Het
Fry	G	T	5: 150,304,348 (GRCm39)	M579I	possibly damaging	Het
Ggt7	A	T	2: 155,337,800 (GRCm39)	M488K	probably benign	Het
Gnpnat1	T	A	14: 45,619,038 (GRCm39)	H107L	probably benign	Het
Golga2	C	A	2: 32,195,599 (GRCm39)	P798Q	possibly damaging	Het
Gpr35	G	A	1: 92,910,929 (GRCm39)	A214T	probably damaging	Het
Greb1	A	T	12: 16,759,431 (GRCm39)		probably null	Het
Hdac10	G	A	15: 89,012,487 (GRCm39)	T32I	probably benign	Het
Hkdc1	G	A	10: 62,221,478 (GRCm39)	T860I	probably damaging	Het
Icam5	C	A	9: 20,946,738 (GRCm39)	P422Q	possibly damaging	Het
Ist1	A	C	8: 110,404,159 (GRCm39)	S238A	probably benign	Het
Mapt	A	C	11: 104,218,949 (GRCm39)	D352A	probably damaging	Het
Micall2	G	A	5: 139,702,124 (GRCm39)	P373L	possibly damaging	Het
Mocs1	A	G	17: 49,761,585 (GRCm39)	S560G	possibly damaging	Het
Mpo	A	G	11: 87,691,950 (GRCm39)	D461G	probably damaging	Het
Myo1a	G	T	10: 127,546,309 (GRCm39)	V271L	probably damaging	Het
Ncoa1	G	A	12: 4,345,188 (GRCm39)	P720S	not run	Het
Ncr1	T	A	7: 4,341,150 (GRCm39)	I47N	probably damaging	Het
Ndufb6	G	A	4: 40,277,730 (GRCm39)	R66C	probably damaging	Het
Obox5	A	T	7: 15,492,668 (GRCm39)	S208C	probably damaging	Het
Or10q1	T	C	19: 13,726,502 (GRCm39)	S11P	probably damaging	Het
Or2n1d	A	T	17: 38,646,755 (GRCm39)	K236*	probably null	Het
Or5p75-ps1	T	A	7: 108,107,611 (GRCm39)	F116Y	unknown	Het
Or7d9	T	A	9: 20,197,826 (GRCm39)	M285K	probably damaging	Het
Padi4	A	C	4: 140,488,983 (GRCm39)	V152G	probably damaging	Het
Pdzd7	A	T	19: 45,025,450 (GRCm39)	D348E	probably damaging	Het
Pdzph1	T	A	17: 59,186,154 (GRCm39)	K1212N	possibly damaging	Het
Piezo2	C	T	18: 63,160,634 (GRCm39)	G2341R	probably damaging	Het
Plb1	A	G	5: 32,511,028 (GRCm39)	K1298E	probably benign	Het
Prr14l	A	G	5: 32,985,982 (GRCm39)	L1171P	probably benign	Het
Rab11fip5	T	C	6: 85,318,850 (GRCm39)	T680A	probably benign	Het
Rev1	A	T	1: 38,127,146 (GRCm39)	N371K	possibly damaging	Het
Rsf1	CGGCGGCGG	CGGCGGCGGGGGCGGCGG	7: 97,229,133 (GRCm39)		probably benign	Het
Ryr2	A	G	13: 11,799,997 (GRCm39)	C917R	probably damaging	Het
Sall1	A	T	8: 89,757,549 (GRCm39)	S852T	possibly damaging	Het
Serpine2	A	G	1: 79,779,272 (GRCm39)	F296L	probably damaging	Het
Slc12a6	A	T	2: 112,182,887 (GRCm39)	N754I	probably damaging	Het
Slc39a6	A	T	18: 24,718,332 (GRCm39)	L575Q	probably damaging	Het
Smarcc2	T	A	10: 128,321,475 (GRCm39)	L890Q	probably damaging	Het
Smg5	T	A	3: 88,268,378 (GRCm39)	V1006D	probably damaging	Het
Ssh2	T	C	11: 77,283,899 (GRCm39)	V51A	probably damaging	Het
St14	T	C	9: 31,008,195 (GRCm39)	K547E	probably benign	Het
Stag1	T	G	9: 100,678,781 (GRCm39)	V234G	probably damaging	Het
Stag3	A	T	5: 138,280,207 (GRCm39)	Q24L	probably benign	Het
Stra6	T	C	9: 58,048,380 (GRCm39)	Y158H	probably damaging	Het
Tcstv1a	A	T	13: 120,355,666 (GRCm39)		probably null	Het
Tmem196	G	A	12: 119,975,002 (GRCm39)	C62Y	probably damaging	Het
Tmem265	T	A	7: 127,164,039 (GRCm39)	F84L		Het
Tph1	C	T	7: 46,306,627 (GRCm39)		probably null	Het
Ttn	A	G	2: 76,776,834 (GRCm39)	I1522T	unknown	Het
Ulk4	T	A	9: 121,084,178 (GRCm39)	Q129L	probably benign	Het
Usp17la	T	A	7: 104,510,792 (GRCm39)	S466T	probably benign	Het
Vmn2r31	A	T	7: 7,387,744 (GRCm39)	V609E	probably damaging	Het
Vmn2r52	C	T	7: 9,904,744 (GRCm39)	C365Y	probably benign	Het
Zbtb4	A	T	11: 69,666,937 (GRCm39)	T81S	possibly damaging	Het
Zfp605	A	T	5: 110,259,885 (GRCm39)		probably benign	Het

Other mutations in Lrig2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00657:Lrig2	APN	3	104,374,487 (GRCm39)	missense	probably damaging	0.99
IGL00715:Lrig2	APN	3	104,371,264 (GRCm39)	missense	probably damaging	1.00
IGL01105:Lrig2	APN	3	104,371,484 (GRCm39)	nonsense	probably null
IGL01767:Lrig2	APN	3	104,398,861 (GRCm39)	missense	probably benign	0.12
IGL02080:Lrig2	APN	3	104,371,440 (GRCm39)	missense	probably damaging	1.00
IGL02088:Lrig2	APN	3	104,374,424 (GRCm39)	missense	probably damaging	1.00
IGL02967:Lrig2	APN	3	104,401,512 (GRCm39)	intron	probably benign
IGL03024:Lrig2	APN	3	104,401,389 (GRCm39)	missense	probably damaging	1.00
IGL03079:Lrig2	APN	3	104,398,287 (GRCm39)	missense	probably damaging	0.98
IGL03085:Lrig2	APN	3	104,374,575 (GRCm39)	missense	probably damaging	1.00
IGL03162:Lrig2	APN	3	104,371,613 (GRCm39)	missense	probably damaging	1.00
Belladonna	UTSW	3	104,374,682 (GRCm39)	splice site	probably benign
R0414:Lrig2	UTSW	3	104,401,372 (GRCm39)	critical splice donor site	probably null
R0866:Lrig2	UTSW	3	104,371,591 (GRCm39)	missense	probably benign	0.00
R1184:Lrig2	UTSW	3	104,398,227 (GRCm39)	missense	possibly damaging	0.94
R1524:Lrig2	UTSW	3	104,371,192 (GRCm39)	missense	probably benign	0.38
R1606:Lrig2	UTSW	3	104,387,423 (GRCm39)	critical splice donor site	probably null
R1672:Lrig2	UTSW	3	104,399,128 (GRCm39)	missense	probably damaging	1.00
R1701:Lrig2	UTSW	3	104,401,993 (GRCm39)	missense	probably benign	0.02
R1778:Lrig2	UTSW	3	104,374,682 (GRCm39)	splice site	probably benign
R2034:Lrig2	UTSW	3	104,401,408 (GRCm39)	missense	probably benign
R2100:Lrig2	UTSW	3	104,418,946 (GRCm39)	missense	possibly damaging	0.76
R2186:Lrig2	UTSW	3	104,375,914 (GRCm39)	missense	probably benign	0.00
R3778:Lrig2	UTSW	3	104,365,277 (GRCm39)	missense	probably benign
R3977:Lrig2	UTSW	3	104,365,160 (GRCm39)	missense	probably damaging	1.00
R4119:Lrig2	UTSW	3	104,374,511 (GRCm39)	missense	probably benign	0.00
R4210:Lrig2	UTSW	3	104,374,620 (GRCm39)	missense	probably benign	0.00
R4612:Lrig2	UTSW	3	104,370,099 (GRCm39)	missense	probably damaging	1.00
R4872:Lrig2	UTSW	3	104,398,842 (GRCm39)	missense	possibly damaging	0.66
R5020:Lrig2	UTSW	3	104,365,217 (GRCm39)	missense	possibly damaging	0.71
R5499:Lrig2	UTSW	3	104,368,873 (GRCm39)	missense	probably benign	0.00
R5687:Lrig2	UTSW	3	104,371,388 (GRCm39)	splice site	probably null
R5718:Lrig2	UTSW	3	104,375,931 (GRCm39)	nonsense	probably null
R5886:Lrig2	UTSW	3	104,370,014 (GRCm39)	missense	probably benign	0.01
R5921:Lrig2	UTSW	3	104,370,070 (GRCm39)	nonsense	probably null
R6434:Lrig2	UTSW	3	104,398,863 (GRCm39)	missense	possibly damaging	0.91
R6468:Lrig2	UTSW	3	104,374,509 (GRCm39)	missense	probably damaging	1.00
R6513:Lrig2	UTSW	3	104,373,045 (GRCm39)	missense	probably damaging	1.00
R6675:Lrig2	UTSW	3	104,365,251 (GRCm39)	missense	probably benign	0.35
R7243:Lrig2	UTSW	3	104,404,883 (GRCm39)	splice site	probably null
R7444:Lrig2	UTSW	3	104,404,829 (GRCm39)	nonsense	probably null
R7514:Lrig2	UTSW	3	104,373,076 (GRCm39)	missense	probably damaging	1.00
R7751:Lrig2	UTSW	3	104,401,985 (GRCm39)	nonsense	probably null
R8720:Lrig2	UTSW	3	104,418,998 (GRCm39)	missense	probably damaging	0.99
R8809:Lrig2	UTSW	3	104,368,993 (GRCm39)	missense	probably benign	0.00
R9019:Lrig2	UTSW	3	104,368,914 (GRCm39)	missense	probably benign	0.27
R9204:Lrig2	UTSW	3	104,387,438 (GRCm39)	missense	possibly damaging	0.81
R9215:Lrig2	UTSW	3	104,398,324 (GRCm39)	missense	probably benign	0.00
R9549:Lrig2	UTSW	3	104,398,191 (GRCm39)	missense	probably damaging	0.97
R9562:Lrig2	UTSW	3	104,375,924 (GRCm39)	missense	possibly damaging	0.69
R9664:Lrig2	UTSW	3	104,371,556 (GRCm39)	missense	probably damaging	1.00
R9773:Lrig2	UTSW	3	104,368,838 (GRCm39)	missense	probably benign	0.27

Predicted Primers

PCR Primer
(F):5'- CTAAATGTTAATCTCTGGACTCCAC -3'
(R):5'- ACCTTTGTAGGACTTAGTATTCCTG -3'

Sequencing Primer
(F):5'- TGTTAATCTCTGGACTCCACAAGAAC -3'
(R):5'- TTCTCCTCCCTTCTAGAGCACAC -3'

Posted On

2019-09-13