Incidental Mutation 'R9264:Gmcl1'
| ID |
702420 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Gmcl1
|
| Ensembl Gene |
ENSMUSG00000001157 |
| Gene Name |
germ cell-less, spermatogenesis associated 1 |
| Synonyms |
Gcl, mglc-1, 2810049L19Rik |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.403)
|
| Stock # |
R9264 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
6 |
| Chromosomal Location |
86691768-86733383 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 86714213 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Valine
at position 267
(M267V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000001185
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000001185]
|
| AlphaFold |
Q920G9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000001185
AA Change: M267V
PolyPhen 2
Score 0.250 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000001185
Gene: ENSMUSG00000001157
AA Change: M267V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
23 |
38 |
N/A |
INTRINSIC |
|
low complexity region
|
63 |
75 |
N/A |
INTRINSIC |
|
BTB
|
106 |
206 |
3.76e-11 |
SMART |
|
BACK
|
211 |
298 |
3.6e-3 |
SMART |
|
| Meta Mutation Damage Score |
0.1994 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.1%
|
| Validation Efficiency |
100% (58/58) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a nuclear envelope protein that appears to be involved in spermatogenesis, either directly or by influencing genes that play a more direct role in the process. This multi-exon locus is the homolog of the mouse and drosophila germ cell-less gene but the human genome also contains a single-exon locus on chromosome 5 that contains an open reading frame capable of encoding a highly-related protein. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit impaired nuclear membrane integrity in liver, endocrine pancreas, and testis. Mutant males show reduced fertility with decreased chromatin condensation and morphologically abnormal sperm. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 57 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700017D01Rik |
T |
A |
19: 11,116,466 (GRCm38) |
M1L |
probably benign |
Het |
| Abca15 |
A |
T |
7: 120,401,833 (GRCm38) |
I1531L |
probably benign |
Het |
| Adam28 |
T |
C |
14: 68,607,465 (GRCm38) |
Y791C |
probably benign |
Het |
| Ankrd40 |
T |
A |
11: 94,338,361 (GRCm38) |
I262N |
probably damaging |
Het |
| BC067074 |
G |
A |
13: 113,319,480 (GRCm38) |
V687M |
|
Het |
| Catsperg2 |
A |
T |
7: 29,698,188 (GRCm38) |
N1033K |
possibly damaging |
Het |
| Cdh10 |
A |
T |
15: 18,963,995 (GRCm38) |
D81V |
probably damaging |
Het |
| Cep290 |
T |
C |
10: 100,498,016 (GRCm38) |
V310A |
possibly damaging |
Het |
| Cep78 |
T |
C |
19: 15,974,466 (GRCm38) |
Y325C |
probably damaging |
Het |
| Clstn3 |
T |
A |
6: 124,459,768 (GRCm38) |
D197V |
probably damaging |
Het |
| Col11a1 |
T |
C |
3: 114,212,160 (GRCm38) |
I1647T |
unknown |
Het |
| Col5a1 |
G |
A |
2: 27,964,111 (GRCm38) |
R569K |
unknown |
Het |
| Cyp4a10 |
T |
C |
4: 115,524,278 (GRCm38) |
S180P |
probably benign |
Het |
| D630045J12Rik |
T |
C |
6: 38,158,238 (GRCm38) |
I1336V |
probably benign |
Het |
| Dchs2 |
G |
A |
3: 83,270,477 (GRCm38) |
V946M |
probably damaging |
Het |
| Dnah10 |
A |
G |
5: 124,736,836 (GRCm38) |
R347G |
probably damaging |
Het |
| Dnah11 |
T |
A |
12: 118,027,527 (GRCm38) |
D2368V |
probably damaging |
Het |
| Ganab |
T |
C |
19: 8,912,864 (GRCm38) |
I719T |
possibly damaging |
Het |
| Gm10944 |
C |
A |
10: 10,681,839 (GRCm38) |
A11D |
unknown |
Het |
| Inhbe |
T |
A |
10: 127,350,558 (GRCm38) |
D251V |
probably damaging |
Het |
| Kcnj1 |
G |
A |
9: 32,396,358 (GRCm38) |
R26Q |
probably benign |
Het |
| Lama5 |
A |
G |
2: 180,196,478 (GRCm38) |
|
probably benign |
Het |
| Lin9 |
T |
A |
1: 180,667,347 (GRCm38) |
D251E |
probably damaging |
Het |
| Magel2 |
T |
A |
7: 62,378,596 (GRCm38) |
I416N |
possibly damaging |
Het |
| Mdga2 |
T |
C |
12: 66,513,283 (GRCm38) |
N772S |
probably damaging |
Het |
| Msh3 |
G |
T |
13: 92,349,304 (GRCm38) |
Q171K |
probably benign |
Het |
| Mslnl |
T |
G |
17: 25,742,532 (GRCm38) |
|
probably benign |
Het |
| Mtpn |
A |
G |
6: 35,512,241 (GRCm38) |
L116P |
possibly damaging |
Het |
| Myh7 |
T |
C |
14: 54,975,997 (GRCm38) |
T1351A |
probably benign |
Het |
| Nectin3 |
A |
T |
16: 46,454,635 (GRCm38) |
I353N |
probably damaging |
Het |
| Nprl3 |
A |
T |
11: 32,233,948 (GRCm38) |
N500K |
probably benign |
Het |
| Nup93 |
T |
A |
8: 94,292,720 (GRCm38) |
I181N |
probably benign |
Het |
| Olfr1198 |
T |
C |
2: 88,746,432 (GRCm38) |
H152R |
probably damaging |
Het |
| Olfr362 |
G |
A |
2: 37,104,789 (GRCm38) |
T287I |
probably damaging |
Het |
| Optc |
T |
C |
1: 133,905,240 (GRCm38) |
I41V |
probably benign |
Het |
| Pcdh7 |
C |
A |
5: 58,129,321 (GRCm38) |
N1246K |
probably benign |
Het |
| Pcdhb3 |
T |
A |
18: 37,302,113 (GRCm38) |
D377E |
probably benign |
Het |
| Pnpla6 |
C |
T |
8: 3,523,294 (GRCm38) |
P386L |
probably benign |
Het |
| Polr3a |
T |
C |
14: 24,470,831 (GRCm38) |
T587A |
probably benign |
Het |
| Pramel1 |
T |
G |
4: 143,398,529 (GRCm38) |
L341R |
probably damaging |
Het |
| Rhot2 |
A |
T |
17: 25,841,766 (GRCm38) |
N210K |
probably damaging |
Het |
| Slc37a1 |
A |
G |
17: 31,300,485 (GRCm38) |
I12V |
probably benign |
Het |
| Spata48 |
T |
A |
11: 11,464,678 (GRCm38) |
D141E |
|
Het |
| Sstr3 |
G |
T |
15: 78,539,592 (GRCm38) |
N318K |
probably damaging |
Het |
| Ssx2ip |
T |
C |
3: 146,437,200 (GRCm38) |
V511A |
probably benign |
Het |
| Stfa1 |
G |
A |
16: 36,280,568 (GRCm38) |
V57I |
unknown |
Het |
| Syne1 |
T |
G |
10: 5,262,793 (GRCm38) |
R3265S |
probably damaging |
Het |
| Tacc2 |
G |
T |
7: 130,626,803 (GRCm38) |
K1739N |
probably damaging |
Het |
| Tas2r143 |
A |
T |
6: 42,400,739 (GRCm38) |
M168L |
probably benign |
Het |
| Tm4sf1 |
A |
T |
3: 57,294,610 (GRCm38) |
|
probably null |
Het |
| Ttc16 |
A |
G |
2: 32,763,005 (GRCm38) |
I604T |
possibly damaging |
Het |
| Ugt1a10 |
T |
A |
1: 88,055,671 (GRCm38) |
W64R |
possibly damaging |
Het |
| Usp34 |
A |
T |
11: 23,489,064 (GRCm38) |
H3561L |
|
Het |
| Vasp |
C |
T |
7: 19,259,451 (GRCm38) |
V276I |
unknown |
Het |
| Vwa3a |
A |
G |
7: 120,775,464 (GRCm38) |
N333S |
probably benign |
Het |
| Wipf3 |
A |
G |
6: 54,483,881 (GRCm38) |
N105D |
probably benign |
Het |
| Zfp760 |
T |
C |
17: 21,723,682 (GRCm38) |
S613P |
possibly damaging |
Het |
|
| Other mutations in Gmcl1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02015:Gmcl1
|
APN |
6 |
86,707,457 (GRCm38) |
missense |
possibly damaging |
0.52 |
|
IGL03354:Gmcl1
|
APN |
6 |
86,726,158 (GRCm38) |
missense |
probably damaging |
1.00 |
|
PIT4453001:Gmcl1
|
UTSW |
6 |
86,704,538 (GRCm38) |
missense |
probably benign |
0.09 |
|
R0149:Gmcl1
|
UTSW |
6 |
86,732,909 (GRCm38) |
critical splice donor site |
probably null |
|
|
R1398:Gmcl1
|
UTSW |
6 |
86,714,262 (GRCm38) |
splice site |
probably benign |
|
|
R1869:Gmcl1
|
UTSW |
6 |
86,697,516 (GRCm38) |
missense |
probably benign |
0.20 |
|
R1871:Gmcl1
|
UTSW |
6 |
86,697,516 (GRCm38) |
missense |
probably benign |
0.20 |
|
R2851:Gmcl1
|
UTSW |
6 |
86,726,177 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4584:Gmcl1
|
UTSW |
6 |
86,722,623 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4585:Gmcl1
|
UTSW |
6 |
86,722,623 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4664:Gmcl1
|
UTSW |
6 |
86,732,998 (GRCm38) |
missense |
probably benign |
0.30 |
|
R4851:Gmcl1
|
UTSW |
6 |
86,704,556 (GRCm38) |
missense |
possibly damaging |
0.64 |
|
R4957:Gmcl1
|
UTSW |
6 |
86,710,521 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5326:Gmcl1
|
UTSW |
6 |
86,726,145 (GRCm38) |
missense |
possibly damaging |
0.96 |
|
R5482:Gmcl1
|
UTSW |
6 |
86,718,073 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5496:Gmcl1
|
UTSW |
6 |
86,697,525 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R5817:Gmcl1
|
UTSW |
6 |
86,714,248 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5854:Gmcl1
|
UTSW |
6 |
86,714,259 (GRCm38) |
splice site |
silent |
|
|
R5891:Gmcl1
|
UTSW |
6 |
86,707,443 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5895:Gmcl1
|
UTSW |
6 |
86,711,614 (GRCm38) |
missense |
probably benign |
0.03 |
|
R6012:Gmcl1
|
UTSW |
6 |
86,721,412 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6257:Gmcl1
|
UTSW |
6 |
86,700,641 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R7693:Gmcl1
|
UTSW |
6 |
86,714,257 (GRCm38) |
missense |
probably benign |
0.10 |
|
R7698:Gmcl1
|
UTSW |
6 |
86,707,415 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7999:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8049:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8093:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8109:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8110:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8111:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8154:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8157:Gmcl1
|
UTSW |
6 |
86,721,426 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8208:Gmcl1
|
UTSW |
6 |
86,721,399 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R8250:Gmcl1
|
UTSW |
6 |
86,721,402 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
R8509:Gmcl1
|
UTSW |
6 |
86,722,607 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9308:Gmcl1
|
UTSW |
6 |
86,714,257 (GRCm38) |
missense |
possibly damaging |
0.87 |
|
R9350:Gmcl1
|
UTSW |
6 |
86,700,587 (GRCm38) |
missense |
probably damaging |
0.99 |
|
| Predicted Primers |
PCR Primer
(F):5'- CAAGCAGCATGTATAGTTCCTCTG -3'
(R):5'- GCAGTGTTAGCTAGCTCAGG -3'
Sequencing Primer
(F):5'- AGCATGTATAGTTCCTCTGCTTATTG -3'
(R):5'- TAAATTCAAGCCCTAGACCTGTGGG -3'
|
| Posted On |
2022-03-25 |
Incidental Mutation