Mutagenetix > Incidental Mutation

Incidental Mutation 'R7974:Vmn2r89'

650797

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r89

Ensembl Gene

ENSMUSG00000070448

Gene Name

vomeronasal 2, receptor 89

Synonyms

V2r10, V2r11

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.156) question?

Stock #

R7974 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

51451962-51461293 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 51456002 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 270 (I270F)

Ref Sequence

ENSEMBL: ENSMUSP00000124065 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000159611] [ENSMUST00000159734] [ENSMUST00000161670] [ENSMUST00000162998]

AlphaFold

O35199

Predicted Effect

probably damaging
Transcript: ENSMUST00000159611
AA Change: I270F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000124065
Gene: ENSMUSG00000070448
AA Change: I270F

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
Pfam:ANF_receptor	76	449	4.8e-30	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000159734
AA Change: I270F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000124256
Gene: ENSMUSG00000070448
AA Change: I270F

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
Pfam:ANF_receptor	76	420	1.1e-29	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000161670

SMART Domains

Protein: ENSMUSP00000124261
Gene: ENSMUSG00000070448

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000162998

SMART Domains

Protein: ENSMUSP00000125409
Gene: ENSMUSG00000068399

Domain	Start	End	E-Value	Type
Pfam:Takusan	35	115	2.2e-25	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim1	C	T	19: 57,044,973		probably null	Het
Adamts19	A	T	18: 59,011,022	Q892L	possibly damaging	Het
Adamts9	A	G	6: 92,909,687		probably null	Het
Aftph	T	C	11: 20,698,233	*686W	probably null	Het
AI661453	T	C	17: 47,466,081	L244P	unknown	Het
Ankar	C	A	1: 72,698,979	E15*	probably null	Het
Ankrd39	A	G	1: 36,546,918		probably benign	Het
Arsi	A	G	18: 60,912,406	D56G	probably damaging	Het
Blmh	T	C	11: 76,965,903	I245T	possibly damaging	Het
Ccr6	T	C	17: 8,256,224	F87S	probably damaging	Het
Cdc42ep2	T	C	19: 5,918,495	K61E	probably damaging	Het
Celsr1	C	T	15: 86,031,030	G914D	probably damaging	Het
Cep126	T	A	9: 8,120,763	K86N	probably benign	Het
Cfap70	A	T	14: 20,420,750	F532I	probably damaging	Het
Cpsf3	T	A	12: 21,308,005	L506Q	probably damaging	Het
Dct	A	C	14: 118,039,655	I273S	probably damaging	Het
Dsel	T	C	1: 111,860,499	I769V	probably benign	Het
Dus2	G	A	8: 106,036,020	E138K	probably benign	Het
Emsy	A	G	7: 98,630,218	S305P	possibly damaging	Het
Erp27	A	T	6: 136,908,065	V245D	probably damaging	Het
Fez1	C	A	9: 36,843,948	T81K	probably damaging	Het
Gli3	A	C	13: 15,726,256	Q1409H	probably benign	Het
Gm10696	T	C	3: 94,175,541	K321R	probably benign	Het
Hdac9	T	C	12: 34,303,220	S664G	possibly damaging	Het
Hibadh	A	G	6: 52,557,895	S167P	probably benign	Het
Hsdl1	A	G	8: 119,566,333	V121A	probably benign	Het
Ighv1-18	A	C	12: 114,683,049	I6S	possibly damaging	Het
Iqcm	T	A	8: 75,554,892	M1K	probably null	Het
Itch	T	C	2: 155,192,159	F417S	probably damaging	Het
Itpr1	C	T	6: 108,523,405	T2653I	possibly damaging	Het
Kank1	T	G	19: 25,424,220	Y1064D	probably damaging	Het
Kmt2c	T	C	5: 25,300,563	Q3249R	probably damaging	Het
Lefty1	T	C	1: 180,937,820	C318R	probably damaging	Het
Lmbr1l	C	T	15: 98,911,619	V147I	probably benign	Het
Meig1	C	A	2: 3,411,874	E37*	probably null	Het
Mpp3	A	G	11: 102,008,354		probably null	Het
Muc3	T	C	5: 137,146,816	N2S		Het
Mup7	T	C	4: 60,067,518	E199G	possibly damaging	Het
Nol4	G	C	18: 22,719,025	Y275*	probably null	Het
Nrxn1	G	A	17: 90,700,779	P429S	probably damaging	Het
Olfr761	T	C	17: 37,952,781	Y81C	probably damaging	Het
Pfkl	A	T	10: 77,994,162	F367L	probably damaging	Het
Pik3cg	T	C	12: 32,204,032	E652G	probably benign	Het
Prkag3	A	G	1: 74,744,821	I301T	probably benign	Het
Rcn1	G	A	2: 105,393,710	P163L	probably benign	Het
Slc1a7	G	A	4: 108,012,276	V513M	probably benign	Het
Slc37a2	A	T	9: 37,239,125		probably null	Het
Slc9b1	C	T	3: 135,394,030	T437I	possibly damaging	Het
Smap1	T	G	1: 23,849,441	T248P	probably benign	Het
Smpd3	A	C	8: 106,255,622	C617G	probably benign	Het
Spata20	T	C	11: 94,484,140	N212S	possibly damaging	Het
Sphkap	A	C	1: 83,278,962	C355W	probably damaging	Het
Spsb1	T	A	4: 149,907,109	M1L	probably damaging	Het
Srebf2	C	T	15: 82,178,765	R468C	probably damaging	Het
Stxbp5	A	C	10: 9,770,695		probably null	Het
Taar5	G	C	10: 23,971,222	D173H	possibly damaging	Het
Tfrc	A	G	16: 32,621,283	D438G	probably null	Het
Tinag	A	T	9: 76,999,849	I368K	probably benign	Het
Tm9sf1	A	G	14: 55,636,449	W531R	probably damaging	Het
Tnc	G	T	4: 64,000,724	P1154Q	possibly damaging	Het
Toporsl	A	G	4: 52,611,645	R513G	probably damaging	Het
Ttc30a1	T	C	2: 75,980,344	H465R	probably damaging	Het
Vat1	A	G	11: 101,466,130	S2P	probably benign	Het
Vmn2r107	C	G	17: 20,357,008	P423A	probably benign	Het
Vmn2r2	T	A	3: 64,117,387	E591V	probably damaging	Het
Vmn2r62	G	A	7: 42,764,607	T804I	probably damaging	Het
Vmn2r62	T	A	7: 42,787,857	Y401F	probably damaging	Het
Zfp418	T	C	7: 7,182,168	F377L	possibly damaging	Het
Zkscan5	T	C	5: 145,207,692	S182P	unknown	Het

Other mutations in Vmn2r89

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00433:Vmn2r89	APN	14	51454965	missense	probably damaging	1.00
IGL00990:Vmn2r89	APN	14	51455971	missense	probably benign	0.14
IGL00990:Vmn2r89	APN	14	51457493	missense	probably benign
IGL01991:Vmn2r89	APN	14	51452219	missense	probably benign	0.00
IGL03073:Vmn2r89	APN	14	51456071	missense	possibly damaging	0.95
IGL03085:Vmn2r89	APN	14	51452158	missense	probably damaging	0.99
IGL03278:Vmn2r89	APN	14	51455100	missense	probably damaging	0.99
R0115:Vmn2r89	UTSW	14	51456120	missense	probably damaging	1.00
R0127:Vmn2r89	UTSW	14	51455703	missense	probably damaging	0.98
R0391:Vmn2r89	UTSW	14	51455978	missense	probably damaging	0.99
R0481:Vmn2r89	UTSW	14	51456120	missense	probably damaging	1.00
R0538:Vmn2r89	UTSW	14	51457591	splice site	probably null
R1210:Vmn2r89	UTSW	14	51454970	missense	probably benign	0.01
R1332:Vmn2r89	UTSW	14	51455102	missense	probably benign	0.00
R1660:Vmn2r89	UTSW	14	51456236	missense	possibly damaging	0.48
R1959:Vmn2r89	UTSW	14	51457440	missense	probably benign	0.22
R2876:Vmn2r89	UTSW	14	51455084	missense	possibly damaging	0.47
R3410:Vmn2r89	UTSW	14	51456171	missense	probably damaging	0.98
R4026:Vmn2r89	UTSW	14	51452043	start codon destroyed	probably null	1.00
R4398:Vmn2r89	UTSW	14	51452094	missense	probably damaging	1.00
R4700:Vmn2r89	UTSW	14	51457485	missense	probably damaging	1.00
R4714:Vmn2r89	UTSW	14	51452231	missense	probably damaging	0.97
R5162:Vmn2r89	UTSW	14	51456163	missense	possibly damaging	0.88
R5294:Vmn2r89	UTSW	14	51455113	missense	probably benign	0.00
R5811:Vmn2r89	UTSW	14	51456108	missense	probably benign	0.12
R6087:Vmn2r89	UTSW	14	51457576	splice site	probably null
R6229:Vmn2r89	UTSW	14	51455721	missense	probably benign	0.05
R6246:Vmn2r89	UTSW	14	51456046	missense	probably damaging	1.00
R6572:Vmn2r89	UTSW	14	51455993	missense	probably damaging	1.00
R7351:Vmn2r89	UTSW	14	51456282	missense	probably benign	0.30
R7683:Vmn2r89	UTSW	14	51455194	missense	probably benign
R8047:Vmn2r89	UTSW	14	51455092	missense	probably benign	0.05
R8093:Vmn2r89	UTSW	14	51456242	missense	probably benign	0.00
R8348:Vmn2r89	UTSW	14	51455091	missense	possibly damaging	0.90
R8723:Vmn2r89	UTSW	14	51456453	missense	probably benign
R8737:Vmn2r89	UTSW	14	51456265	missense	probably damaging	1.00
R8859:Vmn2r89	UTSW	14	51455713	missense	probably benign
R9183:Vmn2r89	UTSW	14	51455044	missense	probably benign	0.01
R9197:Vmn2r89	UTSW	14	51456139	missense	possibly damaging	0.70
R9377:Vmn2r89	UTSW	14	51455144	missense	probably benign	0.02
R9395:Vmn2r89	UTSW	14	51456326	missense	probably damaging	1.00
R9452:Vmn2r89	UTSW	14	51455831	missense	probably damaging	0.99
R9457:Vmn2r89	UTSW	14	51456012	missense	probably damaging	0.99
R9678:Vmn2r89	UTSW	14	51456054	missense	probably benign	0.09
X0019:Vmn2r89	UTSW	14	51456415	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- ATGGCATGGTCTCCTTGATG -3'
(R):5'- ATCTCAACTTTGTGGTGTGCAAAAG -3'

Sequencing Primer
(F):5'- ACTTGGATAGGACTGGTCATCTCAG -3'
(R):5'- AACTTTGTGGTGTGCAAAAGTGATAG -3'

Posted On

2020-09-15