Mutagenetix > Incidental Mutation

Incidental Mutation 'R3946:Svs5'

307694

Institutional Source

Beutler Lab

Gene Symbol

Svs5

Ensembl Gene

ENSMUSG00000017004

Gene Name

seminal vesicle secretory protein 5

Synonyms

seminal vesicle protein F, Svp-1, Svp1, SVS V, Svp5

MMRRC Submission

040827-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R3946 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

164174685-164176314 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 164079047 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 287 (M287V)

Ref Sequence

ENSEMBL: ENSMUSP00000104999 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044953] [ENSMUST00000109374]

AlphaFold

P30933

Predicted Effect

probably benign
Transcript: ENSMUST00000044953
AA Change: M287V

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000042389
Gene: ENSMUSG00000040132
AA Change: M287V

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:SVS_QK	110	121	1.2e-6	PFAM
Pfam:SVS_QK	122	137	3.9e-3	PFAM
Pfam:SVS_QK	139	149	1.3e-5	PFAM
Pfam:SVS_QK	151	166	8.4e-4	PFAM
Pfam:SVS_QK	168	179	5.3e-6	PFAM
Pfam:SVS_QK	180	195	3.9e-3	PFAM
Pfam:SVS_QK	197	207	1.3e-5	PFAM
Pfam:SVS_QK	210	221	8.8e-5	PFAM
Pfam:SVS_QK	225	236	7.7e-6	PFAM
Pfam:SVS_QK	238	249	6.1e-6	PFAM
Pfam:SVS_QK	249	260	5.2e-4	PFAM
Pfam:SVS_QK	262	272	3.1e-5	PFAM
Pfam:SVS_QK	323	334	6.7e-5	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000109374
AA Change: M287V

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000104999
Gene: ENSMUSG00000040132
AA Change: M287V

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:SVS_QK	110	121	1.2e-6	PFAM
Pfam:SVS_QK	122	137	3.9e-3	PFAM
Pfam:SVS_QK	139	149	1.3e-5	PFAM
Pfam:SVS_QK	151	166	8.4e-4	PFAM
Pfam:SVS_QK	168	179	5.3e-6	PFAM
Pfam:SVS_QK	180	195	3.9e-3	PFAM
Pfam:SVS_QK	197	207	1.3e-5	PFAM
Pfam:SVS_QK	210	221	8.8e-5	PFAM
Pfam:SVS_QK	225	236	7.7e-6	PFAM
Pfam:SVS_QK	238	249	6.1e-6	PFAM
Pfam:SVS_QK	249	260	5.2e-4	PFAM
Pfam:SVS_QK	262	272	3.1e-5	PFAM
Pfam:SVS_QK	323	334	6.7e-5	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.1%

Validation Efficiency

98% (60/61)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abi2	A	G	1: 60,492,913 (GRCm39)	Q328R	probably damaging	Het
Agr3	C	A	12: 35,997,512 (GRCm39)		probably benign	Het
Brca2	T	A	5: 150,460,169 (GRCm39)	S481R	probably damaging	Het
Cabin1	T	G	10: 75,581,093 (GRCm39)	Q411P	probably damaging	Het
Calr3	A	G	8: 73,197,464 (GRCm39)	Y22H	probably damaging	Het
Caprin1	T	A	2: 103,627,111 (GRCm39)	I59F	probably damaging	Het
Cdk5rap1	T	C	2: 154,190,636 (GRCm39)	T442A	probably damaging	Het
Chn2	T	C	6: 54,246,411 (GRCm39)		probably benign	Het
Cic	C	A	7: 24,971,771 (GRCm39)	R501S	possibly damaging	Het
Coch	A	G	12: 51,648,595 (GRCm39)		probably null	Het
Defa25	G	A	8: 21,574,506 (GRCm39)	V17I	probably null	Het
Dglucy	T	C	12: 100,804,959 (GRCm39)		probably null	Het
Dtx1	T	G	5: 120,819,351 (GRCm39)	T616P	possibly damaging	Het
Eef1g	T	C	19: 8,947,341 (GRCm39)	L171P	probably benign	Het
Fam135a	A	G	1: 24,069,475 (GRCm39)	S465P	probably damaging	Het
Gm14412	A	T	2: 177,006,478 (GRCm39)	C472*	probably null	Het
Gm7104	T	C	12: 88,252,812 (GRCm39)		noncoding transcript	Het
Got2	A	G	8: 96,614,858 (GRCm39)	S26P	probably benign	Het
H2-M11	A	G	17: 36,860,123 (GRCm39)	I329M	probably damaging	Het
Hmcn2	T	A	2: 31,272,406 (GRCm39)	D1295E	possibly damaging	Het
Hoxd12	G	T	2: 74,505,771 (GRCm39)	R114L	probably damaging	Het
Ilkap	A	C	1: 91,314,972 (GRCm39)	D124E	probably damaging	Het
Maco1	A	G	4: 134,531,792 (GRCm39)	Y626H	probably damaging	Het
Med6	T	C	12: 81,628,625 (GRCm39)	Y88C	probably damaging	Het
Mep1a	A	T	17: 43,785,932 (GRCm39)	L719*	probably null	Het
Mmp23	T	C	4: 155,736,480 (GRCm39)	Y187C	probably damaging	Het
Myo1g	A	G	11: 6,470,760 (GRCm39)	M32T	possibly damaging	Het
Ncstn	T	C	1: 171,895,061 (GRCm39)	E614G	probably benign	Het
Nr2c2	C	T	6: 92,140,119 (GRCm39)	R464W	probably damaging	Het
Or4f15	G	A	2: 111,813,642 (GRCm39)	T259M	possibly damaging	Het
Otub2	T	A	12: 103,359,085 (GRCm39)	L58*	probably null	Het
Pcdhga12	G	A	18: 37,900,682 (GRCm39)	V505I	probably benign	Het
Pcdhga9	T	A	18: 37,870,897 (GRCm39)	V242D	probably damaging	Het
Pex1	C	T	5: 3,676,084 (GRCm39)	L891F	probably damaging	Het
Pgm2	C	T	5: 64,269,404 (GRCm39)	T497I	probably benign	Het
Pikfyve	T	C	1: 65,235,840 (GRCm39)	F171L	probably damaging	Het
Pilrb1	T	G	5: 137,855,654 (GRCm39)	K79T	probably benign	Het
Pin1	C	T	9: 20,566,660 (GRCm39)	R21W	probably damaging	Het
Prxl2c	T	C	13: 64,456,912 (GRCm39)	I104V	probably damaging	Het
Ptprq	A	G	10: 107,522,253 (GRCm39)		probably benign	Het
Rad17	G	A	13: 100,759,371 (GRCm39)	A552V	possibly damaging	Het
Rbbp8	A	G	18: 11,851,925 (GRCm39)	T249A	probably benign	Het
Rtkn	A	T	6: 83,112,957 (GRCm39)	I10F	probably benign	Het
Scube2	T	A	7: 109,456,797 (GRCm39)	I103F	possibly damaging	Het
Sec23b	A	G	2: 144,423,893 (GRCm39)	H514R	probably benign	Het
Serbp1	T	A	6: 67,249,204 (GRCm39)	D223E	probably benign	Het
Slc14a1	C	A	18: 78,154,607 (GRCm39)	V260L	probably benign	Het
Slc22a23	A	G	13: 34,367,109 (GRCm39)	I633T	probably damaging	Het
Stk19	A	T	17: 35,043,723 (GRCm39)		probably benign	Het
Syne3	T	A	12: 104,924,325 (GRCm39)	Q358L	probably damaging	Het
Synj1	A	G	16: 90,806,984 (GRCm39)	F58L	possibly damaging	Het
Tg	T	C	15: 66,545,872 (GRCm39)	V198A	probably damaging	Het
Tle4	A	T	19: 14,574,752 (GRCm39)	Y9N	probably damaging	Het
Tmx3	G	A	18: 90,542,459 (GRCm39)	A186T	possibly damaging	Het
Traf3	G	A	12: 111,221,679 (GRCm39)	S280N	possibly damaging	Het
Trmt13	A	G	3: 116,375,167 (GRCm39)	F447S	probably damaging	Het
Trp53bp1	T	A	2: 121,059,107 (GRCm39)	H918L	probably damaging	Het
Ush2a	T	G	1: 188,460,701 (GRCm39)	V2654G	probably benign	Het
Vinac1	A	G	2: 128,881,521 (GRCm39)	L135P	probably damaging	Het
Vmn2r25	A	G	6: 123,817,057 (GRCm39)	Y175H	probably damaging	Het
Zfp335	T	C	2: 164,734,109 (GRCm39)	D1330G	probably damaging	Het

Other mutations in Svs5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00508:Svs5	APN	2	164,078,962 (GRCm39)	missense	possibly damaging	0.86
IGL01722:Svs5	APN	2	164,079,446 (GRCm39)	missense	possibly damaging	0.71
IGL03189:Svs5	APN	2	164,079,032 (GRCm39)	missense	possibly damaging	0.73
IGL03378:Svs5	APN	2	164,175,260 (GRCm39)	missense	probably benign	0.00
R0781:Svs5	UTSW	2	164,175,507 (GRCm39)	missense	probably benign	0.16
R1110:Svs5	UTSW	2	164,175,507 (GRCm39)	missense	probably benign	0.16
R1276:Svs5	UTSW	2	164,079,168 (GRCm39)	missense	possibly damaging	0.95
R1541:Svs5	UTSW	2	164,078,929 (GRCm39)	missense	possibly damaging	0.71
R1590:Svs5	UTSW	2	164,079,578 (GRCm39)	missense	possibly damaging	0.86
R3103:Svs5	UTSW	2	164,175,313 (GRCm39)	missense	probably benign	0.00
R3965:Svs5	UTSW	2	164,079,662 (GRCm39)	missense	possibly damaging	0.53
R4075:Svs5	UTSW	2	164,079,238 (GRCm39)	missense	probably benign	0.01
R4632:Svs5	UTSW	2	164,079,667 (GRCm39)	missense	probably benign	0.40
R4732:Svs5	UTSW	2	164,079,043 (GRCm39)	missense	possibly damaging	0.87
R4733:Svs5	UTSW	2	164,079,043 (GRCm39)	missense	possibly damaging	0.87
R4839:Svs5	UTSW	2	164,078,806 (GRCm39)	missense	probably benign	0.40
R5706:Svs5	UTSW	2	164,079,589 (GRCm39)	missense	possibly damaging	0.53
R6936:Svs5	UTSW	2	164,079,548 (GRCm39)	missense	possibly damaging	0.86
R7052:Svs5	UTSW	2	164,080,126 (GRCm39)	missense	unknown
R7338:Svs5	UTSW	2	164,174,728 (GRCm39)	missense	possibly damaging	0.96
R7836:Svs5	UTSW	2	164,079,500 (GRCm39)	missense	possibly damaging	0.86
R8017:Svs5	UTSW	2	164,175,341 (GRCm39)	missense	possibly damaging	0.86
R8019:Svs5	UTSW	2	164,175,341 (GRCm39)	missense	possibly damaging	0.86
R8035:Svs5	UTSW	2	164,079,053 (GRCm39)	missense	probably benign	0.18
R8100:Svs5	UTSW	2	164,079,712 (GRCm39)	missense	probably benign	0.08
R8187:Svs5	UTSW	2	164,079,692 (GRCm39)	missense	possibly damaging	0.88
R8310:Svs5	UTSW	2	164,080,091 (GRCm39)	missense	probably damaging	1.00
R8312:Svs5	UTSW	2	164,080,091 (GRCm39)	missense	probably damaging	1.00
R9089:Svs5	UTSW	2	164,079,341 (GRCm39)	missense	probably benign	0.27
R9156:Svs5	UTSW	2	164,079,509 (GRCm39)	missense	probably benign	0.32
R9545:Svs5	UTSW	2	164,079,313 (GRCm39)	missense	possibly damaging	0.52
R9790:Svs5	UTSW	2	164,078,918 (GRCm39)	nonsense	probably null
R9791:Svs5	UTSW	2	164,078,918 (GRCm39)	nonsense	probably null
Z1176:Svs5	UTSW	2	164,174,711 (GRCm39)	missense	possibly damaging	0.73

Predicted Primers

PCR Primer
(F):5'- GAGCTTGATAGAGGTCTGCTCC -3'
(R):5'- GTGAAGAAGGTCAACTGAACTCTTTC -3'

Sequencing Primer
(F):5'- CTCCCTTTGTAAAATAGTTACCGGG -3'
(R):5'- TTTCAGCCAACTAAAATCCCAAGGTG -3'

Posted On

2015-04-17