Incidental Mutation 'R7871:Vmn2r109'
ID |
608140 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r109
|
Ensembl Gene |
ENSMUSG00000090572 |
Gene Name |
vomeronasal 2, receptor 109 |
Synonyms |
EG627814 |
MMRRC Submission |
045923-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.069)
|
Stock # |
R7871 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
17 |
Chromosomal Location |
20760779-20785018 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 20760782 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Methionine
at position 858
(I858M)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000132641
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000167093]
|
AlphaFold |
K7N747 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000167093
AA Change: I858M
PolyPhen 2
Score 0.080 (Sensitivity: 0.93; Specificity: 0.85)
|
SMART Domains |
Protein: ENSMUSP00000132641 Gene: ENSMUSG00000090572 AA Change: I858M
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
83 |
467 |
1.4e-35 |
PFAM |
Pfam:NCD3G
|
510 |
563 |
3.1e-21 |
PFAM |
Pfam:7tm_3
|
596 |
831 |
7.4e-52 |
PFAM |
|
Meta Mutation Damage Score |
0.0846 |
Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 98.9%
|
Validation Efficiency |
97% (64/66) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 72 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2900026A02Rik |
A |
G |
5: 113,331,092 (GRCm39) |
S1041P |
probably benign |
Het |
Aatf |
ACACACACACACACACACACACACACACACACACACACACACACACACAC |
ACACACACACACACACACACACACACACACACACACACACACACACACACAC |
11: 84,361,864 (GRCm39) |
|
probably null |
Het |
Arpin |
A |
T |
7: 79,577,463 (GRCm39) |
W195R |
probably damaging |
Het |
Asap1 |
A |
G |
15: 63,963,925 (GRCm39) |
V1091A |
probably damaging |
Het |
Asxl3 |
A |
G |
18: 22,657,281 (GRCm39) |
T1764A |
not run |
Het |
Bmp7 |
C |
A |
2: 172,781,784 (GRCm39) |
A27S |
probably benign |
Het |
Ccnh |
T |
A |
13: 85,359,991 (GRCm39) |
Y297* |
probably null |
Het |
Ccno |
C |
A |
13: 113,124,647 (GRCm39) |
D72E |
probably benign |
Het |
Cd70 |
T |
G |
17: 57,455,770 (GRCm39) |
T67P |
probably damaging |
Het |
Chml |
CTGTTTG |
CTG |
1: 175,514,966 (GRCm39) |
|
probably null |
Het |
Chst4 |
A |
G |
8: 110,757,545 (GRCm39) |
F106S |
probably damaging |
Het |
Cntnap3 |
A |
C |
13: 65,051,587 (GRCm39) |
L23R |
probably benign |
Het |
Crybg2 |
T |
A |
4: 133,814,910 (GRCm39) |
L1288H |
probably damaging |
Het |
Cse1l |
T |
A |
2: 166,777,591 (GRCm39) |
|
probably null |
Het |
Cyfip2 |
T |
C |
11: 46,133,177 (GRCm39) |
H841R |
probably damaging |
Het |
Cyp2c39 |
T |
C |
19: 39,549,405 (GRCm39) |
Y308H |
possibly damaging |
Het |
Cyp4f18 |
G |
A |
8: 72,742,487 (GRCm39) |
P498S |
possibly damaging |
Het |
Dennd1b |
G |
A |
1: 138,990,611 (GRCm39) |
E192K |
probably damaging |
Het |
Dnah3 |
T |
A |
7: 119,566,775 (GRCm39) |
I97F |
|
Het |
Entpd3 |
A |
G |
9: 120,389,652 (GRCm39) |
R313G |
possibly damaging |
Het |
Erg28 |
G |
A |
12: 85,866,253 (GRCm39) |
T75I |
probably damaging |
Het |
Fam171a1 |
A |
G |
2: 3,226,421 (GRCm39) |
H518R |
probably benign |
Het |
Fam50b |
G |
A |
13: 34,931,084 (GRCm39) |
E187K |
possibly damaging |
Het |
Galntl6 |
T |
C |
8: 58,290,222 (GRCm39) |
E457G |
probably damaging |
Het |
Glt8d1 |
A |
T |
14: 30,732,296 (GRCm39) |
H192L |
probably damaging |
Het |
Gm15446 |
T |
A |
5: 110,091,165 (GRCm39) |
C472* |
probably null |
Het |
Gm28363 |
A |
T |
1: 117,625,228 (GRCm39) |
M1L |
unknown |
Het |
Gm40460 |
CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG |
CACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAGGAACTACAGCCTCCCTTGCAGCCCCCACAG |
7: 141,794,554 (GRCm39) |
|
probably benign |
Het |
Gstp3 |
T |
A |
19: 4,108,746 (GRCm39) |
K45* |
probably null |
Het |
Hsd17b13 |
A |
G |
5: 104,113,681 (GRCm39) |
F258L |
possibly damaging |
Het |
Htt |
T |
C |
5: 35,021,993 (GRCm39) |
S1646P |
probably benign |
Het |
Ipo11 |
T |
C |
13: 107,028,976 (GRCm39) |
M326V |
probably benign |
Het |
Itpr3 |
T |
A |
17: 27,336,153 (GRCm39) |
I2293N |
probably damaging |
Het |
Klk1b8 |
A |
G |
7: 43,448,750 (GRCm39) |
|
probably null |
Het |
Kntc1 |
T |
A |
5: 123,922,290 (GRCm39) |
L963H |
probably damaging |
Het |
Lyst |
T |
A |
13: 13,810,637 (GRCm39) |
L769* |
probably null |
Het |
Map3k13 |
A |
G |
16: 21,740,346 (GRCm39) |
S558G |
probably benign |
Het |
Mbd1 |
G |
A |
18: 74,407,128 (GRCm39) |
|
probably null |
Het |
Mep1a |
T |
C |
17: 43,790,126 (GRCm39) |
N408D |
probably benign |
Het |
Mtrf1 |
A |
G |
14: 79,644,378 (GRCm39) |
T229A |
probably benign |
Het |
Muc4 |
C |
T |
16: 32,754,935 (GRCm38) |
S1603L |
unknown |
Het |
Myo1b |
A |
C |
1: 51,818,739 (GRCm39) |
I512S |
possibly damaging |
Het |
N4bp2 |
A |
G |
5: 65,964,446 (GRCm39) |
I832V |
probably benign |
Het |
Nadsyn1 |
T |
A |
7: 143,352,233 (GRCm39) |
K618* |
probably null |
Het |
Ncstn |
T |
C |
1: 171,903,023 (GRCm39) |
D87G |
probably benign |
Het |
Neurl4 |
T |
C |
11: 69,794,012 (GRCm39) |
V156A |
probably benign |
Het |
Nfasc |
C |
A |
1: 132,527,751 (GRCm39) |
G885V |
not run |
Het |
Nox4 |
A |
T |
7: 86,963,335 (GRCm39) |
Y180F |
possibly damaging |
Het |
Nuggc |
A |
G |
14: 65,860,700 (GRCm39) |
T449A |
probably benign |
Het |
Or6c209 |
A |
G |
10: 129,483,281 (GRCm39) |
I95V |
probably benign |
Het |
Pik3r4 |
T |
C |
9: 105,540,316 (GRCm39) |
S735P |
probably damaging |
Het |
Ppp1r9b |
T |
C |
11: 94,892,735 (GRCm39) |
I645T |
probably damaging |
Het |
Rras2 |
G |
A |
7: 113,716,783 (GRCm39) |
|
probably benign |
Het |
Rtel1 |
T |
C |
2: 180,962,822 (GRCm39) |
M25T |
probably damaging |
Het |
Serpinb3c |
T |
A |
1: 107,200,883 (GRCm39) |
Y178F |
possibly damaging |
Het |
Sh3bp2 |
A |
G |
5: 34,716,429 (GRCm39) |
H280R |
not run |
Het |
Six4 |
CT |
C |
12: 73,151,013 (GRCm39) |
|
probably benign |
Het |
Skor1 |
T |
C |
9: 63,053,783 (GRCm39) |
E62G |
probably damaging |
Het |
Slc22a22 |
T |
A |
15: 57,126,751 (GRCm39) |
N106I |
possibly damaging |
Het |
Slc44a4 |
T |
A |
17: 35,142,828 (GRCm39) |
|
probably null |
Het |
Sppl2c |
A |
G |
11: 104,079,342 (GRCm39) |
|
probably null |
Het |
Sptbn2 |
C |
G |
19: 4,799,040 (GRCm39) |
R2037G |
probably benign |
Het |
Stx5a |
T |
A |
19: 8,732,482 (GRCm39) |
W384R |
unknown |
Het |
Topaz1 |
A |
G |
9: 122,609,765 (GRCm39) |
Y1111C |
possibly damaging |
Het |
Ttbk1 |
T |
A |
17: 46,757,164 (GRCm39) |
M1157L |
probably benign |
Het |
Ttn |
T |
C |
2: 76,578,489 (GRCm39) |
T24135A |
probably damaging |
Het |
Ttn |
T |
C |
2: 76,795,481 (GRCm39) |
E632G |
unknown |
Het |
Ttn |
T |
C |
2: 76,547,559 (GRCm39) |
T32204A |
probably benign |
Het |
Vmn2r71 |
A |
T |
7: 85,272,869 (GRCm39) |
Q561L |
possibly damaging |
Het |
Yme1l1 |
A |
G |
2: 23,071,077 (GRCm39) |
D271G |
probably damaging |
Het |
Zfp629 |
A |
G |
7: 127,211,167 (GRCm39) |
F214S |
probably damaging |
Het |
Zfp709 |
A |
G |
8: 72,643,308 (GRCm39) |
I246V |
probably benign |
Het |
|
Other mutations in Vmn2r109 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01313:Vmn2r109
|
APN |
17 |
20,770,419 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01383:Vmn2r109
|
APN |
17 |
20,761,383 (GRCm39) |
missense |
possibly damaging |
0.89 |
IGL01469:Vmn2r109
|
APN |
17 |
20,761,671 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01762:Vmn2r109
|
APN |
17 |
20,774,654 (GRCm39) |
missense |
probably benign |
|
IGL01864:Vmn2r109
|
APN |
17 |
20,761,396 (GRCm39) |
missense |
probably benign |
0.28 |
IGL02028:Vmn2r109
|
APN |
17 |
20,761,342 (GRCm39) |
missense |
probably benign |
0.28 |
IGL02074:Vmn2r109
|
APN |
17 |
20,774,603 (GRCm39) |
missense |
probably benign |
0.05 |
IGL02162:Vmn2r109
|
APN |
17 |
20,774,422 (GRCm39) |
missense |
probably benign |
0.01 |
IGL02474:Vmn2r109
|
APN |
17 |
20,761,150 (GRCm39) |
missense |
probably benign |
|
IGL02490:Vmn2r109
|
APN |
17 |
20,761,246 (GRCm39) |
missense |
possibly damaging |
0.78 |
IGL02604:Vmn2r109
|
APN |
17 |
20,760,963 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02669:Vmn2r109
|
APN |
17 |
20,774,518 (GRCm39) |
missense |
possibly damaging |
0.64 |
IGL02705:Vmn2r109
|
APN |
17 |
20,774,062 (GRCm39) |
missense |
probably benign |
|
IGL02745:Vmn2r109
|
APN |
17 |
20,761,512 (GRCm39) |
missense |
probably damaging |
0.99 |
PIT4142001:Vmn2r109
|
UTSW |
17 |
20,774,839 (GRCm39) |
critical splice acceptor site |
probably null |
|
R0389:Vmn2r109
|
UTSW |
17 |
20,761,336 (GRCm39) |
missense |
probably damaging |
1.00 |
R0470:Vmn2r109
|
UTSW |
17 |
20,773,148 (GRCm39) |
missense |
probably benign |
0.06 |
R0570:Vmn2r109
|
UTSW |
17 |
20,760,937 (GRCm39) |
missense |
probably damaging |
0.99 |
R0855:Vmn2r109
|
UTSW |
17 |
20,761,670 (GRCm39) |
nonsense |
probably null |
|
R0882:Vmn2r109
|
UTSW |
17 |
20,774,842 (GRCm39) |
splice site |
probably benign |
|
R1241:Vmn2r109
|
UTSW |
17 |
20,775,503 (GRCm39) |
missense |
possibly damaging |
0.86 |
R1587:Vmn2r109
|
UTSW |
17 |
20,761,002 (GRCm39) |
missense |
probably damaging |
1.00 |
R1931:Vmn2r109
|
UTSW |
17 |
20,774,072 (GRCm39) |
nonsense |
probably null |
|
R1957:Vmn2r109
|
UTSW |
17 |
20,784,969 (GRCm39) |
missense |
probably benign |
0.11 |
R1962:Vmn2r109
|
UTSW |
17 |
20,774,185 (GRCm39) |
missense |
probably damaging |
0.99 |
R2020:Vmn2r109
|
UTSW |
17 |
20,761,448 (GRCm39) |
nonsense |
probably null |
|
R2073:Vmn2r109
|
UTSW |
17 |
20,784,974 (GRCm39) |
missense |
probably benign |
0.00 |
R2436:Vmn2r109
|
UTSW |
17 |
20,774,798 (GRCm39) |
missense |
probably damaging |
0.99 |
R3123:Vmn2r109
|
UTSW |
17 |
20,761,248 (GRCm39) |
missense |
probably damaging |
1.00 |
R3839:Vmn2r109
|
UTSW |
17 |
20,774,704 (GRCm39) |
missense |
probably damaging |
1.00 |
R4019:Vmn2r109
|
UTSW |
17 |
20,774,074 (GRCm39) |
missense |
probably benign |
|
R4428:Vmn2r109
|
UTSW |
17 |
20,773,286 (GRCm39) |
missense |
probably benign |
|
R4584:Vmn2r109
|
UTSW |
17 |
20,774,820 (GRCm39) |
nonsense |
probably null |
|
R4652:Vmn2r109
|
UTSW |
17 |
20,761,656 (GRCm39) |
missense |
probably damaging |
1.00 |
R4708:Vmn2r109
|
UTSW |
17 |
20,761,605 (GRCm39) |
missense |
probably damaging |
0.97 |
R4823:Vmn2r109
|
UTSW |
17 |
20,774,153 (GRCm39) |
missense |
probably damaging |
1.00 |
R4831:Vmn2r109
|
UTSW |
17 |
20,761,494 (GRCm39) |
missense |
probably benign |
0.01 |
R4907:Vmn2r109
|
UTSW |
17 |
20,770,348 (GRCm39) |
missense |
probably damaging |
1.00 |
R5011:Vmn2r109
|
UTSW |
17 |
20,775,451 (GRCm39) |
missense |
probably damaging |
1.00 |
R5296:Vmn2r109
|
UTSW |
17 |
20,774,603 (GRCm39) |
missense |
possibly damaging |
0.90 |
R5600:Vmn2r109
|
UTSW |
17 |
20,761,189 (GRCm39) |
missense |
probably damaging |
1.00 |
R5602:Vmn2r109
|
UTSW |
17 |
20,760,933 (GRCm39) |
missense |
possibly damaging |
0.94 |
R5652:Vmn2r109
|
UTSW |
17 |
20,760,781 (GRCm39) |
makesense |
probably null |
|
R5702:Vmn2r109
|
UTSW |
17 |
20,774,407 (GRCm39) |
missense |
probably benign |
0.42 |
R5706:Vmn2r109
|
UTSW |
17 |
20,774,567 (GRCm39) |
missense |
probably benign |
0.16 |
R5714:Vmn2r109
|
UTSW |
17 |
20,773,121 (GRCm39) |
missense |
probably damaging |
1.00 |
R5832:Vmn2r109
|
UTSW |
17 |
20,761,318 (GRCm39) |
missense |
probably benign |
0.10 |
R6008:Vmn2r109
|
UTSW |
17 |
20,760,981 (GRCm39) |
missense |
probably damaging |
1.00 |
R6334:Vmn2r109
|
UTSW |
17 |
20,761,440 (GRCm39) |
missense |
probably benign |
0.18 |
R6377:Vmn2r109
|
UTSW |
17 |
20,784,796 (GRCm39) |
critical splice donor site |
probably null |
|
R6738:Vmn2r109
|
UTSW |
17 |
20,774,785 (GRCm39) |
missense |
possibly damaging |
0.52 |
R6857:Vmn2r109
|
UTSW |
17 |
20,760,932 (GRCm39) |
missense |
probably benign |
0.45 |
R6953:Vmn2r109
|
UTSW |
17 |
20,760,973 (GRCm39) |
missense |
possibly damaging |
0.95 |
R7108:Vmn2r109
|
UTSW |
17 |
20,785,006 (GRCm39) |
missense |
probably benign |
0.03 |
R7229:Vmn2r109
|
UTSW |
17 |
20,761,225 (GRCm39) |
missense |
possibly damaging |
0.80 |
R7238:Vmn2r109
|
UTSW |
17 |
20,761,336 (GRCm39) |
missense |
probably damaging |
1.00 |
R7244:Vmn2r109
|
UTSW |
17 |
20,760,945 (GRCm39) |
missense |
possibly damaging |
0.70 |
R7292:Vmn2r109
|
UTSW |
17 |
20,761,700 (GRCm39) |
missense |
probably benign |
0.05 |
R7354:Vmn2r109
|
UTSW |
17 |
20,761,043 (GRCm39) |
missense |
probably damaging |
1.00 |
R7357:Vmn2r109
|
UTSW |
17 |
20,761,536 (GRCm39) |
missense |
probably damaging |
1.00 |
R7522:Vmn2r109
|
UTSW |
17 |
20,774,665 (GRCm39) |
missense |
probably benign |
0.11 |
R7596:Vmn2r109
|
UTSW |
17 |
20,760,942 (GRCm39) |
missense |
probably damaging |
0.98 |
R7728:Vmn2r109
|
UTSW |
17 |
20,773,117 (GRCm39) |
missense |
probably damaging |
0.99 |
R7859:Vmn2r109
|
UTSW |
17 |
20,761,436 (GRCm39) |
missense |
probably damaging |
1.00 |
R8113:Vmn2r109
|
UTSW |
17 |
20,774,729 (GRCm39) |
missense |
probably benign |
0.01 |
R8153:Vmn2r109
|
UTSW |
17 |
20,784,969 (GRCm39) |
missense |
probably benign |
0.11 |
R8977:Vmn2r109
|
UTSW |
17 |
20,774,531 (GRCm39) |
missense |
possibly damaging |
0.96 |
R9687:Vmn2r109
|
UTSW |
17 |
20,775,332 (GRCm39) |
missense |
|
|
Z1176:Vmn2r109
|
UTSW |
17 |
20,773,256 (GRCm39) |
missense |
probably benign |
0.00 |
|
Predicted Primers |
PCR Primer
(F):5'- GGTTTGATGCCACCAATTCATAG -3'
(R):5'- AAAGGTCATGGTGGCTATGG -3'
Sequencing Primer
(F):5'- GATCAAGAGAGCATATGTGGTTTTC -3'
(R):5'- GCTATGGAAGTCTTCTCTATCTTAGC -3'
|
Posted On |
2019-12-20 |