Mutagenetix > Incidental Mutation

Incidental Mutation 'R4823:Vmn2r109'

371332

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r109

Ensembl Gene

ENSMUSG00000090572

Gene Name

vomeronasal 2, receptor 109

Synonyms

EG627814

MMRRC Submission

042439-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.074) question?

Stock #

R4823 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

20540517-20564756 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 20553891 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 401 (Y401N)

Ref Sequence

ENSEMBL: ENSMUSP00000132641 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000167093]

AlphaFold

K7N747

Predicted Effect

probably damaging
Transcript: ENSMUST00000167093
AA Change: Y401N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000132641
Gene: ENSMUSG00000090572
AA Change: Y401N

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:ANF_receptor	83	467	1.4e-35	PFAM
Pfam:NCD3G	510	563	3.1e-21	PFAM
Pfam:7tm_3	596	831	7.4e-52	PFAM

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.8%
20x: 94.1%

Validation Efficiency

98% (96/98)

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	G	A	5: 87,972,598 (GRCm38)	D405N	probably benign	Het
4921517D22Rik	T	G	13: 59,690,904 (GRCm38)	E38A	probably damaging	Het
4930433I11Rik	A	T	7: 40,993,362 (GRCm38)	I152F	probably benign	Het
5830473C10Rik	T	A	5: 90,566,503 (GRCm38)	L124H	probably benign	Het
Aass	A	T	6: 23,107,691 (GRCm38)	D364E	probably benign	Het
Adamts2	A	G	11: 50,737,187 (GRCm38)	D238G	probably benign	Het
Aplf	G	A	6: 87,646,255 (GRCm38)	L302F	probably damaging	Het
Apol7b	G	T	15: 77,427,782 (GRCm38)		probably benign	Het
Arhgef12	A	G	9: 43,020,696 (GRCm38)	V165A	probably benign	Het
Ascc3	T	C	10: 50,713,233 (GRCm38)	S1017P	probably damaging	Het
B230104I21Rik	T	A	4: 154,349,747 (GRCm38)		probably benign	Het
Bfsp2	C	A	9: 103,479,883 (GRCm38)	C115F	probably damaging	Het
Bhmt2	A	T	13: 93,663,290 (GRCm38)	W213R	probably benign	Het
C87499	T	C	4: 88,629,215 (GRCm38)	K160R	probably damaging	Het
Capn5	A	T	7: 98,126,441 (GRCm38)	V431E	probably damaging	Het
Ccdc88c	A	G	12: 100,930,543 (GRCm38)	Y1390H	probably damaging	Het
Ccr3	A	G	9: 124,028,681 (GRCm38)	T18A	probably damaging	Het
Cdh5	T	C	8: 104,142,669 (GRCm38)	S676P	probably benign	Het
Ceacam5	A	G	7: 17,757,744 (GRCm38)	T680A	possibly damaging	Het
Cebpd	G	A	16: 15,888,114 (GRCm38)	G264S	probably benign	Het
Cfd	T	C	10: 79,890,948 (GRCm38)	V8A	probably benign	Het
Cops9	C	T	1: 92,641,866 (GRCm38)		probably benign	Het
Cpne6	T	C	14: 55,517,010 (GRCm38)	Y533H	probably damaging	Het
Cyp2c67	T	A	19: 39,615,724 (GRCm38)	H396L	probably benign	Het
Cyp2j9	G	A	4: 96,568,735 (GRCm38)	P500S	possibly damaging	Het
Cyp4a12a	A	T	4: 115,327,413 (GRCm38)		probably null	Het
Dbt	G	A	3: 116,523,387 (GRCm38)	D71N	probably damaging	Het
Ddx41	G	T	13: 55,532,055 (GRCm38)	Q440K	probably benign	Het
Doxl2	A	G	6: 48,975,261 (GRCm38)	D40G	probably damaging	Het
Elovl4	A	G	9: 83,780,685 (GRCm38)	F174S	probably damaging	Het
Emcn	C	G	3: 137,423,426 (GRCm38)	P193R	probably damaging	Het
Etnk1	T	C	6: 143,167,638 (GRCm38)		probably null	Het
Fads3	A	C	19: 10,041,888 (GRCm38)	S53R	probably damaging	Het
Fam193a	A	G	5: 34,459,028 (GRCm38)	E849G	probably damaging	Het
Fat3	A	G	9: 15,996,507 (GRCm38)	V2733A	probably benign	Het
Frem3	T	A	8: 80,613,958 (GRCm38)	M960K	probably benign	Het
Frmd6	A	T	12: 70,872,575 (GRCm38)	I62L	probably benign	Het
Glmp	T	C	3: 88,325,223 (GRCm38)		probably benign	Het
Gm17421	T	C	12: 113,369,541 (GRCm38)		noncoding transcript	Het
Gm27013	T	A	6: 130,522,223 (GRCm38)		noncoding transcript	Het
Gtf2ird1	A	G	5: 134,395,722 (GRCm38)	V390A	probably damaging	Het
Hps3	A	G	3: 20,012,726 (GRCm38)	Y559H	probably benign	Het
Hsh2d	G	A	8: 72,200,460 (GRCm38)	D229N	probably benign	Het
Itpr3	A	G	17: 27,085,147 (GRCm38)	D114G	probably benign	Het
Jmjd4	G	A	11: 59,455,580 (GRCm38)	A408T	probably benign	Het
Kcnh4	G	T	11: 100,755,174 (GRCm38)	A316D	probably damaging	Het
Klrg1	T	A	6: 122,273,533 (GRCm38)		probably null	Het
Lancl2	T	A	6: 57,732,277 (GRCm38)	Y355N	probably damaging	Het
Ltb	T	C	17: 35,195,230 (GRCm38)	S115P	probably benign	Het
Mccc2	T	G	13: 100,000,254 (GRCm38)	R64S	probably benign	Het
Mgam2-ps	T	A	6: 40,832,662 (GRCm38)		noncoding transcript	Het
Mrrf	T	G	2: 36,148,030 (GRCm38)	N104K	possibly damaging	Het
Nipa1	C	A	7: 55,979,688 (GRCm38)	V226L	possibly damaging	Het
Numa1	T	A	7: 101,996,037 (GRCm38)	L290Q	probably damaging	Het
Ofcc1	T	A	13: 40,280,473 (GRCm38)	H52L	probably damaging	Het
Ogfod3	G	A	11: 121,195,201 (GRCm38)	A189V	probably benign	Het
Olfr1176	A	G	2: 88,339,835 (GRCm38)	D90G	probably damaging	Het
Olfr1444	A	T	19: 12,861,816 (GRCm38)	I14F	probably benign	Het
Olfr1505	G	A	19: 13,919,658 (GRCm38)	V213I	probably benign	Het
Olfr292	T	A	7: 86,694,588 (GRCm38)	I44N	probably damaging	Het
P2ry12	G	A	3: 59,217,897 (GRCm38)	S119L	probably benign	Het
Pde7b	T	A	10: 20,438,785 (GRCm38)	N192Y	probably damaging	Het
Pfkl	T	C	10: 77,997,594 (GRCm38)	N258S	probably damaging	Het
Phykpl	G	A	11: 51,586,593 (GRCm38)	A71T	probably damaging	Het
Ppp1r16a	T	C	15: 76,693,193 (GRCm38)		probably benign	Het
Pramef20	T	C	4: 144,373,211 (GRCm38)	N328S	possibly damaging	Het
Prune2	C	T	19: 17,120,504 (GRCm38)	T1124M	probably damaging	Het
Rapgef6	A	G	11: 54,694,500 (GRCm38)	I1570V	probably benign	Het
Rbm34	T	C	8: 126,970,905 (GRCm38)	S19G	probably benign	Het
Rnf10	T	C	5: 115,255,442 (GRCm38)		probably null	Het
Rnf34	A	G	5: 122,850,302 (GRCm38)		probably null	Het
Setd4	A	G	16: 93,589,950 (GRCm38)	S287P	probably benign	Het
Shc3	C	T	13: 51,451,570 (GRCm38)	V225I	probably benign	Het
Sipa1l3	C	T	7: 29,371,002 (GRCm38)	V1030I	probably damaging	Het
Siva1	G	T	12: 112,645,064 (GRCm38)	R33L	probably damaging	Het
Slc4a5	C	T	6: 83,272,133 (GRCm38)	T573I	probably damaging	Het
Sorcs1	C	T	19: 50,678,140 (GRCm38)	R110Q	possibly damaging	Het
Sorcs1	T	C	19: 50,230,302 (GRCm38)	I581V	possibly damaging	Het
Sorl1	T	C	9: 41,992,321 (GRCm38)	D1545G	probably damaging	Het
Tas2r124	T	G	6: 132,755,546 (GRCm38)	S273A	probably damaging	Het
Tcf15	T	C	2: 152,143,893 (GRCm38)	F90L	probably damaging	Het
Trim59	G	A	3: 69,037,120 (GRCm38)	R296C	probably benign	Het
Tulp1	A	T	17: 28,353,572 (GRCm38)	D229E	probably benign	Het
Ush1c	T	A	7: 46,195,733 (GRCm38)	N886I	probably benign	Het
Usp9y	A	T	Y: 1,444,559 (GRCm38)	S127T	probably damaging	Het
Vmn1r19	T	A	6: 57,405,234 (GRCm38)	Y257*	probably null	Het
Vmn2r69	A	C	7: 85,411,300 (GRCm38)	S359A	probably benign	Het
Zfp37	A	T	4: 62,191,503 (GRCm38)	N479K	probably benign	Het

Other mutations in Vmn2r109

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01313:Vmn2r109	APN	17	20,550,157 (GRCm38)	missense	probably damaging	1.00
IGL01383:Vmn2r109	APN	17	20,541,121 (GRCm38)	missense	possibly damaging	0.89
IGL01469:Vmn2r109	APN	17	20,541,409 (GRCm38)	missense	probably damaging	1.00
IGL01762:Vmn2r109	APN	17	20,554,392 (GRCm38)	missense	probably benign
IGL01864:Vmn2r109	APN	17	20,541,134 (GRCm38)	missense	probably benign	0.28
IGL02028:Vmn2r109	APN	17	20,541,080 (GRCm38)	missense	probably benign	0.28
IGL02074:Vmn2r109	APN	17	20,554,341 (GRCm38)	missense	probably benign	0.05
IGL02162:Vmn2r109	APN	17	20,554,160 (GRCm38)	missense	probably benign	0.01
IGL02474:Vmn2r109	APN	17	20,540,888 (GRCm38)	missense	probably benign
IGL02490:Vmn2r109	APN	17	20,540,984 (GRCm38)	missense	possibly damaging	0.78
IGL02604:Vmn2r109	APN	17	20,540,701 (GRCm38)	missense	probably damaging	1.00
IGL02669:Vmn2r109	APN	17	20,554,256 (GRCm38)	missense	possibly damaging	0.64
IGL02705:Vmn2r109	APN	17	20,553,800 (GRCm38)	missense	probably benign
IGL02745:Vmn2r109	APN	17	20,541,250 (GRCm38)	missense	probably damaging	0.99
PIT4142001:Vmn2r109	UTSW	17	20,554,577 (GRCm38)	critical splice acceptor site	probably null
R0389:Vmn2r109	UTSW	17	20,541,074 (GRCm38)	missense	probably damaging	1.00
R0470:Vmn2r109	UTSW	17	20,552,886 (GRCm38)	missense	probably benign	0.06
R0570:Vmn2r109	UTSW	17	20,540,675 (GRCm38)	missense	probably damaging	0.99
R0855:Vmn2r109	UTSW	17	20,541,408 (GRCm38)	nonsense	probably null
R0882:Vmn2r109	UTSW	17	20,554,580 (GRCm38)	splice site	probably benign
R1241:Vmn2r109	UTSW	17	20,555,241 (GRCm38)	missense	possibly damaging	0.86
R1587:Vmn2r109	UTSW	17	20,540,740 (GRCm38)	missense	probably damaging	1.00
R1931:Vmn2r109	UTSW	17	20,553,810 (GRCm38)	nonsense	probably null
R1957:Vmn2r109	UTSW	17	20,564,707 (GRCm38)	missense	probably benign	0.11
R1962:Vmn2r109	UTSW	17	20,553,923 (GRCm38)	missense	probably damaging	0.99
R2020:Vmn2r109	UTSW	17	20,541,186 (GRCm38)	nonsense	probably null
R2073:Vmn2r109	UTSW	17	20,564,712 (GRCm38)	missense	probably benign	0.00
R2436:Vmn2r109	UTSW	17	20,554,536 (GRCm38)	missense	probably damaging	0.99
R3123:Vmn2r109	UTSW	17	20,540,986 (GRCm38)	missense	probably damaging	1.00
R3839:Vmn2r109	UTSW	17	20,554,442 (GRCm38)	missense	probably damaging	1.00
R4019:Vmn2r109	UTSW	17	20,553,812 (GRCm38)	missense	probably benign
R4428:Vmn2r109	UTSW	17	20,553,024 (GRCm38)	missense	probably benign
R4584:Vmn2r109	UTSW	17	20,554,558 (GRCm38)	nonsense	probably null
R4652:Vmn2r109	UTSW	17	20,541,394 (GRCm38)	missense	probably damaging	1.00
R4708:Vmn2r109	UTSW	17	20,541,343 (GRCm38)	missense	probably damaging	0.97
R4831:Vmn2r109	UTSW	17	20,541,232 (GRCm38)	missense	probably benign	0.01
R4907:Vmn2r109	UTSW	17	20,550,086 (GRCm38)	missense	probably damaging	1.00
R5011:Vmn2r109	UTSW	17	20,555,189 (GRCm38)	missense	probably damaging	1.00
R5296:Vmn2r109	UTSW	17	20,554,341 (GRCm38)	missense	possibly damaging	0.90
R5600:Vmn2r109	UTSW	17	20,540,927 (GRCm38)	missense	probably damaging	1.00
R5602:Vmn2r109	UTSW	17	20,540,671 (GRCm38)	missense	possibly damaging	0.94
R5652:Vmn2r109	UTSW	17	20,540,519 (GRCm38)	makesense	probably null
R5702:Vmn2r109	UTSW	17	20,554,145 (GRCm38)	missense	probably benign	0.42
R5706:Vmn2r109	UTSW	17	20,554,305 (GRCm38)	missense	probably benign	0.16
R5714:Vmn2r109	UTSW	17	20,552,859 (GRCm38)	missense	probably damaging	1.00
R5832:Vmn2r109	UTSW	17	20,541,056 (GRCm38)	missense	probably benign	0.10
R6008:Vmn2r109	UTSW	17	20,540,719 (GRCm38)	missense	probably damaging	1.00
R6334:Vmn2r109	UTSW	17	20,541,178 (GRCm38)	missense	probably benign	0.18
R6377:Vmn2r109	UTSW	17	20,564,534 (GRCm38)	critical splice donor site	probably null
R6738:Vmn2r109	UTSW	17	20,554,523 (GRCm38)	missense	possibly damaging	0.52
R6857:Vmn2r109	UTSW	17	20,540,670 (GRCm38)	missense	probably benign	0.45
R6953:Vmn2r109	UTSW	17	20,540,711 (GRCm38)	missense	possibly damaging	0.95
R7108:Vmn2r109	UTSW	17	20,564,744 (GRCm38)	missense	probably benign	0.03
R7229:Vmn2r109	UTSW	17	20,540,963 (GRCm38)	missense	possibly damaging	0.80
R7238:Vmn2r109	UTSW	17	20,541,074 (GRCm38)	missense	probably damaging	1.00
R7244:Vmn2r109	UTSW	17	20,540,683 (GRCm38)	missense	possibly damaging	0.70
R7292:Vmn2r109	UTSW	17	20,541,438 (GRCm38)	missense	probably benign	0.05
R7354:Vmn2r109	UTSW	17	20,540,781 (GRCm38)	missense	probably damaging	1.00
R7357:Vmn2r109	UTSW	17	20,541,274 (GRCm38)	missense	probably damaging	1.00
R7522:Vmn2r109	UTSW	17	20,554,403 (GRCm38)	missense	probably benign	0.11
R7596:Vmn2r109	UTSW	17	20,540,680 (GRCm38)	missense	probably damaging	0.98
R7728:Vmn2r109	UTSW	17	20,552,855 (GRCm38)	missense	probably damaging	0.99
R7859:Vmn2r109	UTSW	17	20,541,174 (GRCm38)	missense	probably damaging	1.00
R7871:Vmn2r109	UTSW	17	20,540,520 (GRCm38)	missense	probably benign	0.08
R8113:Vmn2r109	UTSW	17	20,554,467 (GRCm38)	missense	probably benign	0.01
R8153:Vmn2r109	UTSW	17	20,564,707 (GRCm38)	missense	probably benign	0.11
R8977:Vmn2r109	UTSW	17	20,554,269 (GRCm38)	missense	possibly damaging	0.96
R9687:Vmn2r109	UTSW	17	20,555,070 (GRCm38)	missense
Z1176:Vmn2r109	UTSW	17	20,552,994 (GRCm38)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TCCCATGAGTGAACAAGATGAAC -3'
(R):5'- GTTTGACTCATTCCATGGTAGCC -3'

Sequencing Primer
(F):5'- GGATACCTAATTTGCTTTCATTGCAG -3'
(R):5'- CCATGGTAGCCTAATTTTTACTTACC -3'

Posted On

2016-03-01