Mutagenetix > Incidental Mutation

Incidental Mutation 'R2243:Nlrp2'

240722

Institutional Source

Beutler Lab

Gene Symbol

Nlrp2

Ensembl Gene

ENSMUSG00000035177

Gene Name

NLR family, pyrin domain containing 2

Synonyms

Nbs1, Pan1, PYPAF2, E330007A02Rik, Nalp2

MMRRC Submission

040243-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2243 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

5298547-5351035 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 5335598 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 99 (V99I)

Ref Sequence

ENSEMBL: ENSMUSP00000045077 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045022]

AlphaFold

Q4PLS0

Predicted Effect

probably benign
Transcript: ENSMUST00000045022
AA Change: V99I

PolyPhen 2 Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000045077
Gene: ENSMUSG00000035177
AA Change: V99I

Domain	Start	End	E-Value	Type
PYRIN	7	90	2.88e-17	SMART
Pfam:NACHT	180	348	6.9e-30	PFAM
internal_repeat_1	676	722	1.74e-5	PROSPERO
LRR	796	823	1.26e1	SMART
LRR	825	852	1.18e1	SMART
LRR	853	880	5.81e-2	SMART
LRR	882	909	3.39e-3	SMART
LRR	910	937	5.06e-2	SMART
LRR	939	966	5.23e0	SMART
LRR	967	994	3.58e-2	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.5%

Validation Efficiency

100% (40/40)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the nucleotide-binding and leucine-rich repeat receptor (NLR) family, and is predicted to contain an N-terminal pyrin effector domain (PYD), a centrally-located nucleotide-binding and oligomerization domain (NACHT) and C-terminal leucine-rich repeats (LRR). Members of this gene family are thought to be important regulators of immune responses. This gene product interacts with components of the IkB kinase (IKK) complex, and can regulate both caspase-1 and NF-kB (nuclear factor kappa-light-chain-enhancer of activated B cells) activity. The pyrin domain is necessary and sufficient for suppression of NF-kB activity. An allelic variant (rs147585490) has been found that is incapable of blocking the transcriptional activity of NF-kB. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2016]

Allele List at MGI

Other mutations in this stock

Total: 36 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agbl1	A	T	7: 76,418,722 (GRCm38)	E93D	possibly damaging	Het
Akap10	C	A	11: 61,915,501 (GRCm38)	V134F	possibly damaging	Het
Bnc1	T	C	7: 81,974,073 (GRCm38)	I469V	possibly damaging	Het
Bod1l	T	A	5: 41,821,545 (GRCm38)	I809L	possibly damaging	Het
Dicer1	T	A	12: 104,730,188 (GRCm38)	E118V	probably damaging	Het
Dmbt1	T	C	7: 131,046,562 (GRCm38)	F274S	probably benign	Het
Dnaaf2	T	G	12: 69,196,644 (GRCm38)	T548P	possibly damaging	Het
Dysf	G	A	6: 84,186,509 (GRCm38)		probably null	Het
Fchsd2	A	G	7: 101,233,885 (GRCm38)	N240S	probably benign	Het
Foxb1	T	C	9: 69,759,864 (GRCm38)	Y128C	probably damaging	Het
Fxr2	A	T	11: 69,642,070 (GRCm38)	K158M	possibly damaging	Het
Gm438	G	A	4: 144,777,421 (GRCm38)	R387C	probably benign	Het
Golga4	C	A	9: 118,556,904 (GRCm38)	D1031E	probably benign	Het
Hbb-bs	T	C	7: 103,827,811 (GRCm38)	D22G	possibly damaging	Het
Hivep2	C	A	10: 14,128,969 (GRCm38)	T437K	probably benign	Het
Hnrnpul2	T	A	19: 8,820,637 (GRCm38)	M119K	probably benign	Het
Kif18a	C	A	2: 109,298,107 (GRCm38)	H369Q	probably damaging	Het
Klhdc10	A	G	6: 30,449,559 (GRCm38)	T207A	probably damaging	Het
Lig4	A	G	8: 9,972,161 (GRCm38)	C540R	possibly damaging	Het
Lilr4b	A	T	10: 51,481,608 (GRCm38)	N133Y	possibly damaging	Het
Lrrc31	T	A	3: 30,685,030 (GRCm38)		probably benign	Het
Mslnl	G	A	17: 25,742,934 (GRCm38)	V128M	probably damaging	Het
Myof	C	T	19: 37,901,319 (GRCm38)	R2009H	probably damaging	Het
Olfr317	G	A	11: 58,732,445 (GRCm38)	T240M	probably damaging	Het
Pcnx	T	C	12: 81,918,705 (GRCm38)	S549P	probably damaging	Het
Pkhd1l1	T	C	15: 44,546,927 (GRCm38)	F2610S	probably damaging	Het
S100a14	A	G	3: 90,527,807 (GRCm38)	T42A	possibly damaging	Het
Serpina6	T	A	12: 103,646,928 (GRCm38)	Y371F	probably benign	Het
Slc43a3	T	C	2: 84,948,438 (GRCm38)		probably benign	Het
Taldo1	C	A	7: 141,392,304 (GRCm38)	T28K	probably damaging	Het
Tatdn3	T	C	1: 191,052,900 (GRCm38)	Y184C	probably damaging	Het
Tep1	G	C	14: 50,854,210 (GRCm38)	R625G	probably benign	Het
Timm44	A	T	8: 4,267,871 (GRCm38)	I179N	possibly damaging	Het
Uimc1	A	T	13: 55,050,739 (GRCm38)		probably null	Het
Vmn1r68	A	T	7: 10,528,162 (GRCm38)	V3E	probably damaging	Het
Zer1	A	T	2: 30,101,127 (GRCm38)	F683L	probably damaging	Het

Other mutations in Nlrp2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00485:Nlrp2	APN	7	5,337,548 (GRCm38)	missense	probably benign	0.00
IGL00545:Nlrp2	APN	7	5,328,252 (GRCm38)	missense	possibly damaging	0.89
IGL01311:Nlrp2	APN	7	5,319,239 (GRCm38)	missense	possibly damaging	0.92
IGL01345:Nlrp2	APN	7	5,317,492 (GRCm38)	missense	probably benign	0.16
IGL01583:Nlrp2	APN	7	5,337,770 (GRCm38)	missense	probably damaging	1.00
IGL01659:Nlrp2	APN	7	5,328,035 (GRCm38)	missense	probably damaging	1.00
IGL02240:Nlrp2	APN	7	5,327,823 (GRCm38)	missense	probably damaging	1.00
IGL02353:Nlrp2	APN	7	5,337,599 (GRCm38)	missense	probably damaging	1.00
IGL02360:Nlrp2	APN	7	5,337,599 (GRCm38)	missense	probably damaging	1.00
IGL02399:Nlrp2	APN	7	5,328,810 (GRCm38)	missense	probably damaging	1.00
IGL02441:Nlrp2	APN	7	5,335,567 (GRCm38)	critical splice donor site	probably null
IGL02588:Nlrp2	APN	7	5,327,552 (GRCm38)	nonsense	probably null
IGL02803:Nlrp2	APN	7	5,328,318 (GRCm38)	missense	probably damaging	1.00
IGL02968:Nlrp2	APN	7	5,301,025 (GRCm38)	missense	possibly damaging	0.81
IGL03342:Nlrp2	APN	7	5,317,483 (GRCm38)	missense	probably damaging	1.00
BB006:Nlrp2	UTSW	7	5,327,499 (GRCm38)	missense	probably damaging	1.00
BB016:Nlrp2	UTSW	7	5,327,499 (GRCm38)	missense	probably damaging	1.00
R0027:Nlrp2	UTSW	7	5,322,448 (GRCm38)	missense	probably damaging	1.00
R0051:Nlrp2	UTSW	7	5,322,334 (GRCm38)	unclassified	probably benign
R0079:Nlrp2	UTSW	7	5,327,730 (GRCm38)	missense	possibly damaging	0.81
R0130:Nlrp2	UTSW	7	5,322,418 (GRCm38)	missense	possibly damaging	0.77
R0157:Nlrp2	UTSW	7	5,308,770 (GRCm38)	missense	possibly damaging	0.88
R0201:Nlrp2	UTSW	7	5,328,329 (GRCm38)	missense	probably benign	0.00
R0276:Nlrp2	UTSW	7	5,328,109 (GRCm38)	missense	probably benign	0.00
R0288:Nlrp2	UTSW	7	5,328,545 (GRCm38)	missense	probably benign	0.19
R0332:Nlrp2	UTSW	7	5,317,630 (GRCm38)	missense	probably damaging	1.00
R0724:Nlrp2	UTSW	7	5,319,222 (GRCm38)	missense	probably damaging	1.00
R1241:Nlrp2	UTSW	7	5,328,431 (GRCm38)	missense	probably damaging	1.00
R1355:Nlrp2	UTSW	7	5,327,491 (GRCm38)	missense	possibly damaging	0.81
R1392:Nlrp2	UTSW	7	5,329,015 (GRCm38)	splice site	probably benign
R1470:Nlrp2	UTSW	7	5,300,951 (GRCm38)	missense	probably benign	0.18
R1470:Nlrp2	UTSW	7	5,300,951 (GRCm38)	missense	probably benign	0.18
R1563:Nlrp2	UTSW	7	5,308,725 (GRCm38)	missense	probably damaging	1.00
R1866:Nlrp2	UTSW	7	5,327,716 (GRCm38)	nonsense	probably null
R1942:Nlrp2	UTSW	7	5,322,448 (GRCm38)	missense	probably damaging	1.00
R1959:Nlrp2	UTSW	7	5,327,738 (GRCm38)	missense	probably damaging	1.00
R1960:Nlrp2	UTSW	7	5,327,738 (GRCm38)	missense	probably damaging	1.00
R1961:Nlrp2	UTSW	7	5,327,738 (GRCm38)	missense	probably damaging	1.00
R2072:Nlrp2	UTSW	7	5,325,006 (GRCm38)	missense	probably damaging	1.00
R2161:Nlrp2	UTSW	7	5,325,042 (GRCm38)	missense	probably damaging	1.00
R2190:Nlrp2	UTSW	7	5,319,238 (GRCm38)	missense	possibly damaging	0.95
R2277:Nlrp2	UTSW	7	5,328,129 (GRCm38)	missense	probably benign
R2334:Nlrp2	UTSW	7	5,337,535 (GRCm38)	missense	probably benign	0.39
R3030:Nlrp2	UTSW	7	5,327,748 (GRCm38)	missense	probably damaging	1.00
R3404:Nlrp2	UTSW	7	5,319,287 (GRCm38)	missense	probably benign	0.01
R3941:Nlrp2	UTSW	7	5,327,552 (GRCm38)	nonsense	probably null
R4021:Nlrp2	UTSW	7	5,325,012 (GRCm38)	missense	probably benign	0.40
R4518:Nlrp2	UTSW	7	5,325,056 (GRCm38)	missense	possibly damaging	0.85
R4666:Nlrp2	UTSW	7	5,319,189 (GRCm38)	missense	probably benign	0.18
R4767:Nlrp2	UTSW	7	5,328,024 (GRCm38)	missense	probably damaging	1.00
R4827:Nlrp2	UTSW	7	5,328,951 (GRCm38)	missense	possibly damaging	0.60
R4873:Nlrp2	UTSW	7	5,298,859 (GRCm38)	missense	probably benign	0.09
R4875:Nlrp2	UTSW	7	5,298,859 (GRCm38)	missense	probably benign	0.09
R5020:Nlrp2	UTSW	7	5,328,077 (GRCm38)	missense	probably damaging	1.00
R5293:Nlrp2	UTSW	7	5,327,615 (GRCm38)	missense	probably damaging	1.00
R5310:Nlrp2	UTSW	7	5,325,008 (GRCm38)	missense	probably benign	0.00
R5336:Nlrp2	UTSW	7	5,328,119 (GRCm38)	missense	probably benign
R5390:Nlrp2	UTSW	7	5,300,909 (GRCm38)	missense	probably benign	0.00
R5864:Nlrp2	UTSW	7	5,322,381 (GRCm38)	missense	probably damaging	1.00
R5913:Nlrp2	UTSW	7	5,324,903 (GRCm38)	splice site	probably null
R6173:Nlrp2	UTSW	7	5,337,809 (GRCm38)	missense	probably damaging	0.96
R6274:Nlrp2	UTSW	7	5,317,555 (GRCm38)	missense	probably damaging	1.00
R6303:Nlrp2	UTSW	7	5,337,761 (GRCm38)	missense	probably damaging	1.00
R6343:Nlrp2	UTSW	7	5,300,926 (GRCm38)	missense	possibly damaging	0.82
R6704:Nlrp2	UTSW	7	5,325,041 (GRCm38)	nonsense	probably null
R6814:Nlrp2	UTSW	7	5,308,710 (GRCm38)	missense	probably benign	0.01
R6872:Nlrp2	UTSW	7	5,308,710 (GRCm38)	missense	probably benign	0.01
R7023:Nlrp2	UTSW	7	5,328,229 (GRCm38)	nonsense	probably null
R7028:Nlrp2	UTSW	7	5,328,572 (GRCm38)	missense	possibly damaging	0.93
R7109:Nlrp2	UTSW	7	5,328,617 (GRCm38)	missense	probably damaging	1.00
R7203:Nlrp2	UTSW	7	5,317,534 (GRCm38)	missense	probably damaging	1.00
R7322:Nlrp2	UTSW	7	5,308,645 (GRCm38)	missense	possibly damaging	0.94
R7339:Nlrp2	UTSW	7	5,327,628 (GRCm38)	missense	possibly damaging	0.95
R7573:Nlrp2	UTSW	7	5,317,469 (GRCm38)	critical splice donor site	probably null
R7657:Nlrp2	UTSW	7	5,319,168 (GRCm38)	missense	probably benign	0.01
R7929:Nlrp2	UTSW	7	5,327,499 (GRCm38)	missense	probably damaging	1.00
R7964:Nlrp2	UTSW	7	5,328,528 (GRCm38)	missense	probably damaging	1.00
R8097:Nlrp2	UTSW	7	5,327,651 (GRCm38)	missense	probably damaging	1.00
R8276:Nlrp2	UTSW	7	5,317,495 (GRCm38)	missense	probably benign	0.40
R8785:Nlrp2	UTSW	7	5,327,549 (GRCm38)	missense	probably damaging	0.99
R8798:Nlrp2	UTSW	7	5,327,888 (GRCm38)	missense	possibly damaging	0.86
R8982:Nlrp2	UTSW	7	5,324,979 (GRCm38)	missense	probably damaging	1.00
R9030:Nlrp2	UTSW	7	5,322,458 (GRCm38)	missense	probably null	0.00
R9038:Nlrp2	UTSW	7	5,327,479 (GRCm38)	missense	probably benign	0.14
R9149:Nlrp2	UTSW	7	5,327,573 (GRCm38)	missense	probably benign	0.01
R9229:Nlrp2	UTSW	7	5,301,053 (GRCm38)	missense	possibly damaging	0.81
R9584:Nlrp2	UTSW	7	5,319,216 (GRCm38)	missense	probably damaging	1.00
X0027:Nlrp2	UTSW	7	5,327,642 (GRCm38)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- ACTACTCAGTGCTCGACATG -3'
(R):5'- AGTGTAGGGCTTCACCTAGG -3'

Sequencing Primer
(F):5'- CATGAGACAGGCCAGAACTTAGTG -3'
(R):5'- ACATCTGGGGAAACATGC -3'

Posted On

2014-10-15