Incidental Mutation 'R1579:Vmn2r26'
| ID |
171281 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Vmn2r26
|
| Ensembl Gene |
ENSMUSG00000096630 |
| Gene Name |
vomeronasal 2, receptor 26 |
| Synonyms |
V2r1b |
| MMRRC Submission |
039616-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.088)
|
| Stock # |
R1579 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
6 |
| Chromosomal Location |
124024758-124062035 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to C
at 124039747 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Proline
at position 390
(R390P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000032238
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032238]
|
| AlphaFold |
Q6TAC4 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000032238
AA Change: R390P
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
| SMART Domains |
Protein: ENSMUSP00000032238
Gene: ENSMUSG00000096630
AA Change: R390P
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
Pfam:ANF_receptor
|
82 |
471 |
1.5e-31 |
PFAM |
|
Pfam:NCD3G
|
519 |
572 |
4.6e-25 |
PFAM |
|
Pfam:7tm_3
|
603 |
840 |
1.5e-55 |
PFAM |
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.2%
- 10x: 96.0%
- 20x: 91.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Mice homozygous for a knock-out allele exhibit abnormal vomeronasal sensory neuron physiology and avnosmia. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 63 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700037C18Rik |
T |
C |
16: 3,906,175 (GRCm38) |
R162G |
probably benign |
Het |
| Adamtsl4 |
T |
A |
3: 95,685,497 (GRCm38) |
|
probably benign |
Het |
| Adgrv1 |
A |
T |
13: 81,563,779 (GRCm38) |
L306H |
probably damaging |
Het |
| Aknad1 |
T |
A |
3: 108,752,136 (GRCm38) |
Y155* |
probably null |
Het |
| Aldh6a1 |
C |
T |
12: 84,441,848 (GRCm38) |
R88H |
possibly damaging |
Het |
| Apc2 |
G |
C |
10: 80,311,345 (GRCm38) |
K715N |
probably damaging |
Het |
| Arhgap45 |
G |
A |
10: 80,028,977 (GRCm38) |
V798M |
probably damaging |
Het |
| BC037034 |
T |
C |
5: 138,261,866 (GRCm38) |
I338V |
probably benign |
Het |
| Calcrl |
T |
C |
2: 84,333,537 (GRCm38) |
T437A |
probably benign |
Het |
| Cdan1 |
A |
G |
2: 120,730,739 (GRCm38) |
F183L |
probably damaging |
Het |
| Chmp7 |
C |
T |
14: 69,719,450 (GRCm38) |
M336I |
probably benign |
Het |
| Cntnap4 |
A |
G |
8: 112,881,830 (GRCm38) |
E1294G |
possibly damaging |
Het |
| Crybg3 |
C |
A |
16: 59,530,198 (GRCm38) |
G2607V |
probably damaging |
Het |
| Dhx29 |
G |
T |
13: 112,935,598 (GRCm38) |
|
probably null |
Het |
| Dmrtb1 |
T |
A |
4: 107,684,125 (GRCm38) |
H13L |
probably damaging |
Het |
| Echdc2 |
A |
G |
4: 108,173,809 (GRCm38) |
M162V |
probably benign |
Het |
| Entpd8 |
A |
G |
2: 25,084,974 (GRCm38) |
D439G |
possibly damaging |
Het |
| Fastkd2 |
C |
G |
1: 63,745,887 (GRCm38) |
H477Q |
probably null |
Het |
| Fbrs |
A |
G |
7: 127,485,357 (GRCm38) |
E517G |
probably damaging |
Het |
| Gchfr |
A |
G |
2: 119,172,021 (GRCm38) |
T71A |
possibly damaging |
Het |
| Hecw1 |
A |
T |
13: 14,377,907 (GRCm38) |
C35S |
probably damaging |
Het |
| Izumo1r |
C |
T |
9: 14,901,802 (GRCm38) |
R58H |
probably benign |
Het |
| Kif13a |
T |
C |
13: 46,752,856 (GRCm38) |
E537G |
possibly damaging |
Het |
| Kif13b |
G |
A |
14: 64,782,341 (GRCm38) |
|
probably null |
Het |
| Kremen1 |
CGGG |
CGGGGGG |
11: 5,201,791 (GRCm38) |
|
probably benign |
Het |
| Lnpk |
A |
T |
2: 74,547,996 (GRCm38) |
D140E |
probably damaging |
Het |
| Ltbp1 |
A |
G |
17: 75,252,367 (GRCm38) |
M284V |
probably benign |
Het |
| Me3 |
A |
T |
7: 89,845,842 (GRCm38) |
T323S |
possibly damaging |
Het |
| Mtus1 |
A |
G |
8: 41,082,858 (GRCm38) |
V607A |
probably damaging |
Het |
| Myh14 |
A |
T |
7: 44,655,694 (GRCm38) |
|
probably null |
Het |
| Myo1h |
T |
A |
5: 114,347,435 (GRCm38) |
C545* |
probably null |
Het |
| Nbn |
T |
A |
4: 15,964,289 (GRCm38) |
D121E |
probably damaging |
Het |
| Nox4 |
A |
G |
7: 87,370,023 (GRCm38) |
Y408C |
probably damaging |
Het |
| Nup214 |
C |
T |
2: 32,034,466 (GRCm38) |
S1669F |
probably damaging |
Het |
| Olfr1153 |
G |
A |
2: 87,896,942 (GRCm38) |
A248T |
probably benign |
Het |
| Olfr1491 |
A |
G |
19: 13,705,202 (GRCm38) |
D125G |
probably damaging |
Het |
| Olfr653 |
T |
A |
7: 104,580,061 (GRCm38) |
Y138* |
probably null |
Het |
| Osbpl5 |
T |
C |
7: 143,709,202 (GRCm38) |
T150A |
possibly damaging |
Het |
| Pgap3 |
C |
A |
11: 98,390,053 (GRCm38) |
M265I |
probably benign |
Het |
| Pirb |
A |
T |
7: 3,717,638 (GRCm38) |
L287Q |
probably benign |
Het |
| Pkd2l2 |
A |
T |
18: 34,427,393 (GRCm38) |
N351I |
possibly damaging |
Het |
| Prkdc |
T |
A |
16: 15,675,328 (GRCm38) |
Y700N |
probably benign |
Het |
| Pzp |
A |
G |
6: 128,523,968 (GRCm38) |
|
probably null |
Het |
| Rfwd3 |
C |
T |
8: 111,288,242 (GRCm38) |
R326Q |
probably damaging |
Het |
| Rptor |
A |
T |
11: 119,896,001 (GRCm38) |
Q1264L |
probably benign |
Het |
| Scnn1a |
T |
C |
6: 125,322,140 (GRCm38) |
F61S |
probably damaging |
Het |
| Tenm2 |
C |
A |
11: 36,106,783 (GRCm38) |
W825C |
probably damaging |
Het |
| Tex264 |
A |
T |
9: 106,681,917 (GRCm38) |
I70N |
possibly damaging |
Het |
| Tns2 |
G |
T |
15: 102,111,210 (GRCm38) |
D504Y |
probably damaging |
Het |
| Trpc2 |
T |
A |
7: 102,084,240 (GRCm38) |
F132Y |
probably damaging |
Het |
| Trpm4 |
A |
G |
7: 45,308,597 (GRCm38) |
F816S |
probably damaging |
Het |
| Uqcc1 |
G |
A |
2: 155,921,721 (GRCm38) |
Q5* |
probably null |
Het |
| Usp36 |
G |
T |
11: 118,284,945 (GRCm38) |
T130N |
probably damaging |
Het |
| Vav1 |
A |
G |
17: 57,297,252 (GRCm38) |
M165V |
probably benign |
Het |
| Vmn1r64 |
A |
T |
7: 5,883,804 (GRCm38) |
F247I |
probably damaging |
Het |
| Vmn2r57 |
G |
T |
7: 41,400,124 (GRCm38) |
H734N |
probably benign |
Het |
| Wfdc16 |
G |
T |
2: 164,635,923 (GRCm38) |
H69N |
possibly damaging |
Het |
| Zfp316 |
C |
T |
5: 143,253,562 (GRCm38) |
E901K |
probably damaging |
Het |
| Zfp334 |
T |
C |
2: 165,381,799 (GRCm38) |
E108G |
probably damaging |
Het |
| Zfp407 |
T |
C |
18: 84,209,638 (GRCm38) |
S1949G |
probably benign |
Het |
| Zfp408 |
A |
G |
2: 91,646,128 (GRCm38) |
L227P |
probably benign |
Het |
| Zfp560 |
T |
C |
9: 20,347,991 (GRCm38) |
H525R |
possibly damaging |
Het |
| Zfp609 |
G |
A |
9: 65,704,472 (GRCm38) |
A403V |
possibly damaging |
Het |
|
| Other mutations in Vmn2r26 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01070:Vmn2r26
|
APN |
6 |
124,061,607 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL01370:Vmn2r26
|
APN |
6 |
124,061,756 (GRCm38) |
missense |
probably benign |
0.08 |
|
IGL01603:Vmn2r26
|
APN |
6 |
124,053,874 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01651:Vmn2r26
|
APN |
6 |
124,050,673 (GRCm38) |
missense |
probably benign |
0.01 |
|
IGL02282:Vmn2r26
|
APN |
6 |
124,061,625 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02425:Vmn2r26
|
APN |
6 |
124,061,818 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02551:Vmn2r26
|
APN |
6 |
124,026,141 (GRCm38) |
missense |
probably benign |
0.11 |
|
IGL02690:Vmn2r26
|
APN |
6 |
124,026,132 (GRCm38) |
missense |
probably benign |
0.14 |
|
IGL03002:Vmn2r26
|
APN |
6 |
124,039,795 (GRCm38) |
missense |
possibly damaging |
0.78 |
|
IGL03270:Vmn2r26
|
APN |
6 |
124,050,819 (GRCm38) |
missense |
probably benign |
0.16 |
|
R0032:Vmn2r26
|
UTSW |
6 |
124,039,899 (GRCm38) |
missense |
possibly damaging |
0.72 |
|
R0052:Vmn2r26
|
UTSW |
6 |
124,062,033 (GRCm38) |
makesense |
probably null |
|
|
R0083:Vmn2r26
|
UTSW |
6 |
124,053,981 (GRCm38) |
splice site |
probably null |
|
|
R0682:Vmn2r26
|
UTSW |
6 |
124,061,170 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R1061:Vmn2r26
|
UTSW |
6 |
124,061,644 (GRCm38) |
missense |
probably benign |
0.12 |
|
R1077:Vmn2r26
|
UTSW |
6 |
124,053,913 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1263:Vmn2r26
|
UTSW |
6 |
124,050,708 (GRCm38) |
missense |
probably benign |
|
|
R1741:Vmn2r26
|
UTSW |
6 |
124,061,472 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1834:Vmn2r26
|
UTSW |
6 |
124,061,410 (GRCm38) |
missense |
possibly damaging |
0.54 |
|
R1838:Vmn2r26
|
UTSW |
6 |
124,024,771 (GRCm38) |
missense |
probably benign |
|
|
R1956:Vmn2r26
|
UTSW |
6 |
124,053,887 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1996:Vmn2r26
|
UTSW |
6 |
124,061,185 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2140:Vmn2r26
|
UTSW |
6 |
124,061,237 (GRCm38) |
missense |
probably benign |
0.01 |
|
R2327:Vmn2r26
|
UTSW |
6 |
124,039,749 (GRCm38) |
missense |
probably benign |
0.07 |
|
R2417:Vmn2r26
|
UTSW |
6 |
124,061,350 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R3930:Vmn2r26
|
UTSW |
6 |
124,025,979 (GRCm38) |
missense |
probably benign |
|
|
R4490:Vmn2r26
|
UTSW |
6 |
124,050,738 (GRCm38) |
missense |
possibly damaging |
0.47 |
|
R4629:Vmn2r26
|
UTSW |
6 |
124,061,191 (GRCm38) |
missense |
possibly damaging |
0.50 |
|
R4655:Vmn2r26
|
UTSW |
6 |
124,061,416 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4709:Vmn2r26
|
UTSW |
6 |
124,053,965 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4992:Vmn2r26
|
UTSW |
6 |
124,026,111 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5297:Vmn2r26
|
UTSW |
6 |
124,061,873 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5482:Vmn2r26
|
UTSW |
6 |
124,061,326 (GRCm38) |
missense |
possibly damaging |
0.88 |
|
R5517:Vmn2r26
|
UTSW |
6 |
124,050,717 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5737:Vmn2r26
|
UTSW |
6 |
124,039,449 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5739:Vmn2r26
|
UTSW |
6 |
124,025,966 (GRCm38) |
missense |
probably benign |
0.00 |
|
R5873:Vmn2r26
|
UTSW |
6 |
124,061,674 (GRCm38) |
missense |
probably benign |
0.01 |
|
R5907:Vmn2r26
|
UTSW |
6 |
124,039,871 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6086:Vmn2r26
|
UTSW |
6 |
124,039,560 (GRCm38) |
missense |
possibly damaging |
0.48 |
|
R6134:Vmn2r26
|
UTSW |
6 |
124,061,485 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R6391:Vmn2r26
|
UTSW |
6 |
124,061,389 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6428:Vmn2r26
|
UTSW |
6 |
124,026,080 (GRCm38) |
missense |
probably benign |
0.17 |
|
R6637:Vmn2r26
|
UTSW |
6 |
124,061,691 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6927:Vmn2r26
|
UTSW |
6 |
124,039,098 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R6953:Vmn2r26
|
UTSW |
6 |
124,039,782 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7173:Vmn2r26
|
UTSW |
6 |
124,061,296 (GRCm38) |
missense |
probably benign |
0.16 |
|
R7206:Vmn2r26
|
UTSW |
6 |
124,039,768 (GRCm38) |
missense |
probably benign |
0.17 |
|
R7208:Vmn2r26
|
UTSW |
6 |
124,061,989 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7283:Vmn2r26
|
UTSW |
6 |
124,025,955 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R7506:Vmn2r26
|
UTSW |
6 |
124,039,741 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7672:Vmn2r26
|
UTSW |
6 |
124,039,647 (GRCm38) |
missense |
probably benign |
0.25 |
|
R7674:Vmn2r26
|
UTSW |
6 |
124,039,362 (GRCm38) |
missense |
probably benign |
|
|
R7696:Vmn2r26
|
UTSW |
6 |
124,061,535 (GRCm38) |
missense |
possibly damaging |
0.94 |
|
R7716:Vmn2r26
|
UTSW |
6 |
124,061,745 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7831:Vmn2r26
|
UTSW |
6 |
124,039,799 (GRCm38) |
nonsense |
probably null |
|
|
R8063:Vmn2r26
|
UTSW |
6 |
124,024,955 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8331:Vmn2r26
|
UTSW |
6 |
124,061,928 (GRCm38) |
missense |
probably benign |
0.22 |
|
R8352:Vmn2r26
|
UTSW |
6 |
124,039,618 (GRCm38) |
missense |
probably benign |
0.09 |
|
R8445:Vmn2r26
|
UTSW |
6 |
124,026,036 (GRCm38) |
missense |
probably damaging |
0.97 |
|
R8452:Vmn2r26
|
UTSW |
6 |
124,039,618 (GRCm38) |
missense |
probably benign |
0.09 |
|
R8681:Vmn2r26
|
UTSW |
6 |
124,024,918 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8914:Vmn2r26
|
UTSW |
6 |
124,062,024 (GRCm38) |
missense |
probably benign |
|
|
R9333:Vmn2r26
|
UTSW |
6 |
124,026,050 (GRCm38) |
missense |
probably benign |
0.13 |
|
R9351:Vmn2r26
|
UTSW |
6 |
124,039,374 (GRCm38) |
missense |
probably benign |
|
|
R9436:Vmn2r26
|
UTSW |
6 |
124,025,867 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R9515:Vmn2r26
|
UTSW |
6 |
124,061,178 (GRCm38) |
missense |
probably damaging |
1.00 |
|
RF010:Vmn2r26
|
UTSW |
6 |
124,039,489 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
| Predicted Primers |
PCR Primer
(F):5'- GGAACGACTTACCTTGACACCTGTTATC -3'
(R):5'- GCATTATTACAAGCCAGAGTCAAACAGC -3'
Sequencing Primer
(F):5'- CAGGTAATGTCTGGATCACAACTTC -3'
(R):5'- CCAGAGTCAAACAGCTTAGAAAAAG -3'
|
| Posted On |
2014-04-13 |
Incidental Mutation